View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1952_high_12 (Length: 505)
Name: NF1952_high_12
Description: NF1952
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1952_high_12 |
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Alignment Details
Target: chr1 (Bit Score: 456; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 456; E-Value: 0
Query Start/End: Original strand, 17 - 495
Target Start/End: Original strand, 37054257 - 37054738
Alignment:
| Q |
17 |
aattagatgtttgtggacattggacaaaggtttcattttcaatctcttggtctttttgttttggactataaggtggttggtgagaatcatttgtgttttg |
116 |
Q |
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| T |
37054257 |
aattagatgtttgtggacattggacaaaggtttcattttcaatatcttggtctttttgttttggactataaggtggttggtgagaatcatttgtgttttg |
37054356 |
T |
|
| Q |
117 |
tggagaactaggtaattggtttggtaataatgaaaatgaattttgcggtgacaataacaaagattgtgtgtcacttaggctaccagctgaagcattagaa |
216 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37054357 |
tggagaactaggtaattggtttggtaataatgaaaatgaattttgaggtgacaataacaaagattgtgtgtcacttaggctaccagctgaagcattagaa |
37054456 |
T |
|
| Q |
217 |
agtcttgtatttgattgtgaatcaacaaatgaatgaaagctttcatcttctgatgaatcacaatcttcatgaacaattttatcaacacattcatgttcat |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37054457 |
agtcttgtatttgattgtgaatcaacaaatgaatgaaagctttcatcttctgatgaatcacaatcttcatgaacaattttatcaacacattcatgttcat |
37054556 |
T |
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| Q |
317 |
ttt---ttactagtttttcttcatgaacagaaacaatttccttagtaaaagaactactaacattattgtcactagtctttgtcaaagtacaagcatgttg |
413 |
Q |
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||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37054557 |
tttttattactagttcttcttcatgaacagaaacaatttccttagtaaaagaactactaacattattgtcactagtctttgtcaaagtacaagcatgttg |
37054656 |
T |
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| Q |
414 |
ttcaacatcttcacctaatgcatcaagatagaacagatctagtcctggatttaaactcaccttgccttttgtttttcctttg |
495 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37054657 |
ttcaacatcttcacctaatgcatcaagatagaacagatctagtcctggatttaaactcaccttgccttttgtttttcctttg |
37054738 |
T |
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