View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1952_high_20 (Length: 426)
Name: NF1952_high_20
Description: NF1952
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1952_high_20 |
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Alignment Details
Target: chr5 (Bit Score: 187; Significance: 1e-101; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 61 - 336
Target Start/End: Complemental strand, 5511637 - 5511355
Alignment:
| Q |
61 |
cgaggtgcattgggtgcctctaaccgtgttatcaacaaatcacagttccacaactgcattgagcataacactcgcatgaccatacatagaataagcaatg |
160 |
Q |
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| T |
5511637 |
cgaggtgcattgggtgcctctaaccgtgttatcaacaaatcaccgttccacaactgcattgagcatagcactagcatgaccatacatagaataagtaata |
5511538 |
T |
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| Q |
161 |
tgaaaattattactcataaaattttatcttaacttaggctttaatcttagagaaaatata------------tcaaacacagacacacacatcaacaacg |
248 |
Q |
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| T |
5511537 |
tgaaaattattactgataaaattttat-----cttaggctttaatgttagagaaaatatatgaagcataaactcaaacacagatacacacatcaacaaca |
5511443 |
T |
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| Q |
249 |
ataataatttaaaaagatgacataatacaatgtgatcatttatgtcagtgtcgtgtggatgtcaaatatgatatggattcgagaaata |
336 |
Q |
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| T |
5511442 |
ataataatttaaaaagatgacataatacaatgtgatcatttatgtcagtgtcgtgtggatatcaaatatgatatggattcgagaaata |
5511355 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 331 - 408
Target Start/End: Complemental strand, 5511320 - 5511243
Alignment:
| Q |
331 |
gaaataaaacaggataatgcatgaaacaataaagcacttgtttcttgtcaaaatacactagtagtttaatatccacaa |
408 |
Q |
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| T |
5511320 |
gaaagaaaacaggataatgcatgaaacaataaagcacttgtttcttgtcaaaatacactagtagtttaatatccacaa |
5511243 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 247 - 301
Target Start/End: Original strand, 31026700 - 31026754
Alignment:
| Q |
247 |
cgataataatttaaaaagatgacataatacaatgtgatcatttatgtcagtgtcg |
301 |
Q |
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| T |
31026700 |
cgataataatttaagaaaatgacataattcaatgtaatcatatatgtcggtgtcg |
31026754 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 240 - 301
Target Start/End: Original strand, 18570970 - 18571031
Alignment:
| Q |
240 |
tcaacaacgataataatttaaaaagatgacataatacaatgtgatcatttatgtcagtgtcg |
301 |
Q |
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|||||| |||||||||||| | || |||||||||| |||||| ||||| | ||||||||||| |
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| T |
18570970 |
tcaacaccgataataatttgagaaaatgacataattcaatgtaatcatatgtgtcagtgtcg |
18571031 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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