View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1952_high_21 (Length: 426)
Name: NF1952_high_21
Description: NF1952
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1952_high_21 |
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Alignment Details
Target: chr7 (Bit Score: 286; Significance: 1e-160; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 9 - 298
Target Start/End: Original strand, 33923490 - 33923779
Alignment:
| Q |
9 |
attattcttattattattatgatatcagaataagtcagtgtgaataaatattccaccacataggagatagagcaaatttaacatcaatcaataaaggaaa |
108 |
Q |
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| T |
33923490 |
attattattattattattatgatatcagaataagtcagtgtgaataaatattccaccacataggagatagagcaaatttaacatcaatcaataaaggaaa |
33923589 |
T |
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| Q |
109 |
ggaaaaataagacgaaaacaagattttattagggcatcaaataagggaaccccactttttattaccctaaaaagttggcaatatgagaaaagttgtggcc |
208 |
Q |
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| T |
33923590 |
ggaaaaataagacgaaaacaagattttattagggcatcaaataagggaaccccactttttattaccctaaaaagttggcaatatgagaaaagttgtggcc |
33923689 |
T |
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| Q |
209 |
tatactatgggccatattcaatcacaataacataaatgttccaacactcctccaccacaaccctacatattcatttatttgccgttatta |
298 |
Q |
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| T |
33923690 |
tatactatgggccatattcaatcacaataacataaatgttccaacactcctccaccacaaccctacatattcatttatttgccgttatta |
33923779 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 326 - 409
Target Start/End: Original strand, 33923807 - 33923890
Alignment:
| Q |
326 |
agtgacctcacatgctttctctgtacgtccttcatataatagactcacaggatacccaaattttcttcatttcctatatgctat |
409 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
33923807 |
agtgacctcacatgctttctctgtacgtccttcatataatagactcacaggatacccaaattttcttcatttcctatatactat |
33923890 |
T |
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