View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1952_high_22 (Length: 422)
Name: NF1952_high_22
Description: NF1952
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1952_high_22 |
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Alignment Details
Target: chr1 (Bit Score: 96; Significance: 6e-47; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 1 - 108
Target Start/End: Original strand, 36630256 - 36630363
Alignment:
| Q |
1 |
aaaaaacaaattttcattttcataacacaagtctcttcctcattcagtactacactactacttacaaccatattcaaaattatattgttgctgtcctgta |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
36630256 |
aaaaaacaaattttcattttcataacacaagtctcttccttattctgtactacactactgcttacaaccatattcaaaattatattgttgctgtcctgta |
36630355 |
T |
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| Q |
101 |
ataaaatt |
108 |
Q |
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|||||||| |
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| T |
36630356 |
ataaaatt |
36630363 |
T |
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Target: chr1; HSP #2
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 157 - 306
Target Start/End: Original strand, 36630563 - 36630712
Alignment:
| Q |
157 |
ttttttatatactactattggttgtttgtcttgagaacgctcgtctttgaatgatttgtcgttattaaactcgtaatttattgcgataagattgaatttg |
256 |
Q |
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||||||||||| ||||||| |||| ||||||||||||||| || ||||| ||||||||| ||||| ||| ||||||||||| ||||| |||| |||| |
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| T |
36630563 |
ttttttatatattactattagttgcttgtcttgagaacgcccgactttgtgtgatttgtccttattgaacccgtaatttattaagataaagttgagtttg |
36630662 |
T |
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| Q |
257 |
gatctaaaaatttggcatgacgtaatgataagatcggatgagagacacac |
306 |
Q |
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|||||||| ||||||| | ||||||| ||||||||| |||||||||||| |
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| T |
36630663 |
gatctaaatatttggcccggcgtaatgctaagatcgggtgagagacacac |
36630712 |
T |
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