View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1952_high_23 (Length: 419)

Name: NF1952_high_23
Description: NF1952
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1952_high_23
NF1952_high_23
[»] chr2 (3 HSPs)
chr2 (18-406)||(13958941-13959329)
chr2 (71-396)||(13976669-13976994)
chr2 (71-396)||(13966501-13966826)


Alignment Details
Target: chr2 (Bit Score: 381; Significance: 0; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 381; E-Value: 0
Query Start/End: Original strand, 18 - 406
Target Start/End: Complemental strand, 13959329 - 13958941
Alignment:
Q  18 aggataaccattatcaagtgacaaaagcctccttttagcattagttaaatcataaacagcatcaaccatgtcaatagcattactacttaattggatagac 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  13959329 aggataaccattatcaagtgacaaaagcctccttttagcattagttaaatcataaacagcatcaaccatgtcaatagcattactgcttaattggatagac 13959230  T
Q  118 gtgttcaaagccctagccattgtttcaccggattttgttgttgtatttgcaaaaccatccaaacatgtttgttgatgagaaagtgtaccggttaaccaaa 217  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13959229 gtgttcaaagccctagccattgtttcaccggcttttgttgttgtatttgcaaaaccatccaaacatgtttgttgatgagaaagtgtaccggttaaccaaa 13959130  T
Q  218 ctttgagatcataagaatattcatgtatcttattaatatcaaatttatccactgcaccaacagatttatgaattccatcaacagcataatccaaaacttc 317  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13959129 ctttgagatcataagaatattcatgtatcttattaatatcaaatttatccactgcaccaacagatttatgaattccatcaacagcataatccaaaacttc 13959030  T
Q  318 attgcaaacttccattgcttgttttgtcatcttgtcttgtcctaattcttgaataagagatgaactgtttatgtgtttcaataactcct 406  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13959029 attgcaaacttccattgcttgttttgtcatcttgtcttgtcctaattcttgaataagagatgaactgtttatgtgtttcaataactcct 13958941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 158; E-Value: 6e-84
Query Start/End: Original strand, 71 - 396
Target Start/End: Complemental strand, 13976994 - 13976669
Alignment:
Q  71 aaacagcatcaaccatgtcaatagcattactacttaattggatagacgtgttcaaagccctagccattgtttcaccggattttgttgttgtatttgcaaa 170  Q
    ||||| |||| | ||||||||| ||||||||||||||||  ||||| || |||||| || ||| |||||||||||| | |||||||||||||||| ||||    
T  13976994 aaacaacatccatcatgtcaatggcattactacttaattccatagaagttttcaaaaccttagtcattgtttcaccagcttttgttgttgtatttacaaa 13976895  T
Q  171 accatccaaacatgtttgttgatgagaaagtgtaccggttaaccaaactttgagatcataagaatattcatgtatcttattaatatcaaatttatccact 270  Q
    |||||| ||||||||||||||||||||||||||||| ||||||||||| |||| |||| ||| |||||||  || |||||  | ||||||||  |||| |    
T  13976894 accatctaaacatgtttgttgatgagaaagtgtaccagttaaccaaaccttgatatcaaaagcatattcacttagcttatggaaatcaaattggtccaat 13976795  T
Q  271 gcaccaacagatttatgaattccatcaacagcataatccaaaacttcattgcaaacttccattgcttgttttgtcatcttgtcttgtcctaattcttgaa 370  Q
    | ||||||||||||||||||||||||||| ||||||||||||||||| ||||||| |||||||||||||||||||||  |||||| ||| |||||||||     
T  13976794 gtaccaacagatttatgaattccatcaacggcataatccaaaacttcgttgcaaatttccattgcttgttttgtcatgctgtcttttcccaattcttgat 13976695  T
Q  371 taagagatgaactgtttatgtgtttc 396  Q
     ||| | |||| ||||||||||||||    
T  13976694 aaagtgctgaattgtttatgtgtttc 13976669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 150; E-Value: 4e-79
Query Start/End: Original strand, 71 - 396
Target Start/End: Complemental strand, 13966826 - 13966501
Alignment:
Q  71 aaacagcatcaaccatgtcaatagcattactacttaattggatagacgtgttcaaagccctagccattgtttcaccggattttgttgttgtatttgcaaa 170  Q
    ||||| |||| | ||||||||| ||||||||||||||||  ||||| || |||||| || ||| |||||||||||| | ||||||| |||||||| ||||    
T  13966826 aaacaacatccatcatgtcaatggcattactacttaattccatagaagttttcaaaaccttagtcattgtttcaccagcttttgtttttgtatttacaaa 13966727  T
Q  171 accatccaaacatgtttgttgatgagaaagtgtaccggttaaccaaactttgagatcataagaatattcatgtatcttattaatatcaaatttatccact 270  Q
    |||||| ||||||||||||||||||||||||||||| ||||||||||| |||| |||| ||| |||||||  || |||||  | ||||||||  |||| |    
T  13966726 accatctaaacatgtttgttgatgagaaagtgtaccagttaaccaaaccttgatatcaaaagcatattcacttagcttatggaaatcaaattggtccaat 13966627  T
Q  271 gcaccaacagatttatgaattccatcaacagcataatccaaaacttcattgcaaacttccattgcttgttttgtcatcttgtcttgtcctaattcttgaa 370  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||  |||||  | | |||||||||     
T  13966626 gtaccaacagatttatgaattccatcaacagcataatccaaaacttcattgcaaatttccatcgcttgttttgtcatgctgtctgttgccaattcttgat 13966527  T
Q  371 taagagatgaactgtttatgtgtttc 396  Q
     ||| | |||| ||||||||||||||    
T  13966526 aaagtgctgaattgtttatgtgtttc 13966501  T

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