View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1952_high_25 (Length: 406)
Name: NF1952_high_25
Description: NF1952
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1952_high_25 |
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Alignment Details
Target: chr4 (Bit Score: 310; Significance: 1e-174; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 15 - 403
Target Start/End: Original strand, 27887768 - 27888158
Alignment:
| Q |
15 |
tatacaaaaacatgtcaaatcgaaacgttaaaaggcaacatcgtaatacaaatagacggaccggtttgccaataatggaagtaaaagaaaataggtatgt |
114 |
Q |
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| T |
27887768 |
tatacaaaaacatgtcaaatcgaaacgctaaaagacaacatcgtaatacaaatagatggactggtctacaaataatggaagtaaaagaaaataggtatgt |
27887867 |
T |
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| Q |
115 |
gagtcttcaacgatcaccaataannnnnnn-gaaggaaatgatcatcaataatgaagttcaacatgtaatttttgtt-gtaaaaagtctgcgaattacgc |
212 |
Q |
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| T |
27887868 |
gagtcttcaacgatcaccaataattttttttgaaggaaacgatcatcgataatgaagttcaacatgtaatttttgtttgtaaaaagtctgcgaattacgc |
27887967 |
T |
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| Q |
213 |
tcctttcaaatgatccaaatactagccaactaaatcacttgaaagcaatgacgaatgttcctcctaaacaaatgagaaccactgaactgcataacatgca |
312 |
Q |
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| T |
27887968 |
tcctttcaaatgatccaaatactagccaactaaatcacttgaaagcaatgacgaatgttcctcctaaacaaatgagaaccactgaactgcataacatgca |
27888067 |
T |
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| Q |
313 |
cgtagacattaaacgaaagatcatttaaaatccccaactacttcaaaatggaagaccaaaagctaccaaaaatatcacatttcaagaatat |
403 |
Q |
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| T |
27888068 |
cgtagacatcaaacgaaagatcatttaaaatctccaactacttcaaaatggaagaccaaaagctaccaaaaatatcacatttcaagaatat |
27888158 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 216 - 294
Target Start/End: Original strand, 53665576 - 53665654
Alignment:
| Q |
216 |
tttcaaatgatccaaatactagccaactaaatcacttgaaagcaatgacgaatgttcctcctaaacaaatgagaaccac |
294 |
Q |
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||||||||||||||||||| || || | | |||| |||||| |||| |||||| ||| | |||||||||||||| |||| |
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| T |
53665576 |
tttcaaatgatccaaatacaagtcatccagatcaattgaaatcaattacgaatattctttctaaacaaatgagagccac |
53665654 |
T |
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