View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1952_high_27 (Length: 401)
Name: NF1952_high_27
Description: NF1952
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1952_high_27 |
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Alignment Details
Target: chr1 (Bit Score: 114; Significance: 1e-57; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 80 - 226
Target Start/End: Complemental strand, 8637797 - 8637651
Alignment:
| Q |
80 |
ataaaagcatgcatcttactaaaggaaatagacaacacactataattaaattaacagtcctgaaatacgtgatgtttggaaaagtataccannnnnnnag |
179 |
Q |
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| T |
8637797 |
ataaaagcatgcatcttactgaaggaaatagacaacacactataattaaattagcagtcctgaaatacgtgatgtttggaaaagtatgccatttttttag |
8637698 |
T |
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| Q |
180 |
caaatacaattctgaaatacatgagatcttgtctttctttaaaggtt |
226 |
Q |
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| T |
8637697 |
caaatacaattctgaaatacatgagatcttgtctttctttaaaggtt |
8637651 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 281 - 401
Target Start/End: Complemental strand, 8637596 - 8637476
Alignment:
| Q |
281 |
cactgaagataaagagaatttgggtattagcagaatgtaatcaactttgatacctgcagtgcacaccaagctcagtggatacaatcagccatcatccatg |
380 |
Q |
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| T |
8637596 |
cactgaagataaagagaatttaggtattagcagaatgtaatcaactttgatacctgcagtgcacacgaagctcagtggatacaatcagccatcatccatg |
8637497 |
T |
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| Q |
381 |
agcatcaaactatccttcaac |
401 |
Q |
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| T |
8637496 |
agcatcaaactatccttcaac |
8637476 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 15 - 64
Target Start/End: Complemental strand, 8637832 - 8637783
Alignment:
| Q |
15 |
agagatgaaaggaacactaaaccaagacatgcataataaaagcatgcatc |
64 |
Q |
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| T |
8637832 |
agagatgaaaggaacactaaaccaagacatgcataataaaagcatgcatc |
8637783 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 50; Significance: 2e-19; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 80 - 222
Target Start/End: Complemental strand, 6756094 - 6755952
Alignment:
| Q |
80 |
ataaaagcatgcatcttactaaaggaaatagacaacacactataattaaattaacagtcctgaaatacgtgatgtttggaaaagtataccannnnnnnag |
179 |
Q |
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|||||| ||||||||||| ||| |||||| ||||||||||| ||||||||||||||||| ||||| |||||||||||||| ||| || || |
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| T |
6756094 |
ataaaaacatgcatcttatcaaaagaaataaacaacacacta--attaaattaacagtcctaaaatatatgatgtttggaaaactatcccttttttttag |
6755997 |
T |
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| Q |
180 |
caaa--tacaattctgaaatacatgagatcttgtctttctttaaa |
222 |
Q |
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| T |
6755996 |
caaatttacaattctgaaatacatgagatcatgtatttctttaaa |
6755952 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 289 - 375
Target Start/End: Complemental strand, 6755875 - 6755789
Alignment:
| Q |
289 |
ataaagagaatttgggtattagcagaatgtaatcaactttgatacctgcagtgcacaccaagctcagtggatacaatcagccatcat |
375 |
Q |
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| T |
6755875 |
ataaaaagaatttaggtattagcagaatgtgaacaactttgataccggcagtgcaaacaaaactcaatggttacaatcaaccatcat |
6755789 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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