View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1952_high_28 (Length: 394)
Name: NF1952_high_28
Description: NF1952
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1952_high_28 |
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Alignment Details
Target: chr8 (Bit Score: 327; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 17 - 378
Target Start/End: Complemental strand, 13577860 - 13577498
Alignment:
| Q |
17 |
gattaacacaactcttttttaaattggttactgcctttgttaataattcaaaatggtcactatctttgtctaaccatcatcctaacaaacatgtca-ccc |
115 |
Q |
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| T |
13577860 |
gattaacacaacttatttttaaattggttactgactttgttaataattcaaaatggtcactatctttgtctaaccatcatcctaacaaacatgtcatccc |
13577761 |
T |
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| Q |
116 |
cttaatattcagcccaacaactccatattttttcccaatctacacgaccaatgcttggtctattattcttttcattccatttccaatatccatcaattcc |
215 |
Q |
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| T |
13577760 |
cttactattcagcccaacaactccatattttttcccaatttacacgaccaatgcttggtctattattcttttcattccatttccaatatccatcaattcc |
13577661 |
T |
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| Q |
216 |
ttggtgaggtggagaatatgaaaccagacccttgtctcctacaacattacaaacgttcatgttatatggctcaattgctttgaacaatagttttgctttt |
315 |
Q |
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| T |
13577660 |
ttggtgaggtggataatatgaaaacagacccttgtctcctacaacattacaaacgttcatgttatatggctcaattgctttgaacaatagttttgctttt |
13577561 |
T |
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| Q |
316 |
aaaaaattatcatgttatatagctcatcataaaaccaaaaatgcaattagaaatcctcaataa |
378 |
Q |
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| T |
13577560 |
aaaaaattatcatgttatatagctcatcataaaaccaaaaatgcaattagaaatcctcaataa |
13577498 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 197 - 378
Target Start/End: Complemental strand, 13566253 - 13566072
Alignment:
| Q |
197 |
tccaatatccatcaattccttggtgaggtggagaatatgaaaccagacccttgtctcctacaacattacaaacgttcatgttatatggctcaattgcttt |
296 |
Q |
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| T |
13566253 |
tccaatatccgtcaatgccttggtgaggtggagaatataaaaacagacccttgtcttctacaacattacaaacgttcatgttatatggctcaattgcttt |
13566154 |
T |
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| Q |
297 |
gaacaatagttttgcttttaaaaaattatcatgttatatagctcatcataaaaccaaaaatgcaattagaaatcctcaataa |
378 |
Q |
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| T |
13566153 |
gcacaatagttttgcttttaaaaaattatcatgttatatagctcatcataaaaccaaaaatgcaaatagaaatcctcaataa |
13566072 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 120 - 197
Target Start/End: Complemental strand, 13566362 - 13566285
Alignment:
| Q |
120 |
atattcagcccaacaactccatattttttcccaatctacacgaccaatgcttggtctattattcttttcattccattt |
197 |
Q |
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||||||||| |||||||||||| |||||||||||| | |||| ||| | || ||||||||||||||||||||||||| |
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| T |
13566362 |
atattcagcacaacaactccatcttttttcccaatttgcacggccagtatttagtctattattcttttcattccattt |
13566285 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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