View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1952_high_32 (Length: 350)
Name: NF1952_high_32
Description: NF1952
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1952_high_32 |
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| [»] scaffold0051 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 307; Significance: 1e-173; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 10 - 332
Target Start/End: Complemental strand, 37533042 - 37532720
Alignment:
| Q |
10 |
aagaaaatactaatatgctaaccttttgtcttaacaaaactctcttacaatgctttatgttgtttcaaataacaactggtacttgttcactattatagca |
109 |
Q |
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| T |
37533042 |
aagaaaatactaatatgctaaccttttgtcttaacaaagctctcttaaaatgctttatgttgtttcaaataacaactggtacttgttcactattatagca |
37532943 |
T |
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| Q |
110 |
tgcctttgataaaaagaactaacaatgtgttttggaccagaaaatttcgcgtgtcgggaataatgtggaagtcttaggaaaattgggttatggagttgca |
209 |
Q |
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| T |
37532942 |
tgcctttgataaaaagaactaacaatgtgttttggaccagaaaatttcgcgtgtcgggaataatgtggaagtcttaggaaaattgggttatggagttgca |
37532843 |
T |
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| Q |
210 |
ttagaaaaagtgcaaccgtatcaatttgattcaggtaggtttaagactctttcacccgtaaaagagactcgagaattcgacttaaaatttataatgttat |
309 |
Q |
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| T |
37532842 |
ttagaaaaagtgcaaccatatcaatttgattcaggtaggtttaagactctttcacgcgtaaaagagactcgagaattcgacttaaaatttataatgttat |
37532743 |
T |
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| Q |
310 |
gcaggaacttcacaacagaagag |
332 |
Q |
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| T |
37532742 |
gcaggaacttcacaacagaagag |
37532720 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 81; Significance: 4e-38; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 201 - 332
Target Start/End: Complemental strand, 26902440 - 26902308
Alignment:
| Q |
201 |
ggagttgcattagaaaaagtgcaaccgtatcaatttgattcaggtaggtttaagactctttcacccgtaaaag-agactcgagaattcgacttaaaattt |
299 |
Q |
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| T |
26902440 |
ggagttgcatcagaaaaagtgcaaccgtgtcaatttgattcaggtaggtttaagactgtttcacgtgtaaaagaagacttgagaacccaacttaaaattt |
26902341 |
T |
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| Q |
300 |
ataatgttatgcaggaacttcacaacagaagag |
332 |
Q |
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| T |
26902340 |
gtaatgttatgcaggaacttcataacagaagag |
26902308 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 25 - 210
Target Start/End: Complemental strand, 26902641 - 26902458
Alignment:
| Q |
25 |
tgctaaccttttgtcttaacaaaactctcttacaatgctttatgttgtttcaaataacaactggtacttgttcac--tattatagcatgcctttgataaa |
122 |
Q |
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| T |
26902641 |
tgctaaccttt-gtcttcacaaaactct--tataatgcttcatgttgtttcaactaataactagtacctctaaacattattatagtttgcttttga-aaa |
26902546 |
T |
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| Q |
123 |
aagaactaacaatgtgttttggaccagaaaatttcgcgtgtcgggaataatgtggaagtcttaggaaaattgggttatggagttgcat |
210 |
Q |
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| T |
26902545 |
gataactaccaatgtgtttttgaccagaaaatttcgagtattgggaataaagtggcagtctcaggaaaatggcgtaatggagttgcat |
26902458 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0051 (Bit Score: 59; Significance: 6e-25; HSPs: 1)
Name: scaffold0051
Description:
Target: scaffold0051; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 223 - 332
Target Start/End: Complemental strand, 44322 - 44212
Alignment:
| Q |
223 |
aaccgtatcaatttgattcaggtaggtttaagactctttcacccgtaaaaga-gactcgagaattcgacttaaaatttataatgttatgcaggaacttca |
321 |
Q |
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| T |
44322 |
aaccgtgtcaatttgattcaggtaggtttaagactgtttcacgtgtaatagacgacttgagaattcaaattaaaatctgtaatgttatgtaggaacttca |
44223 |
T |
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| Q |
322 |
caacagaagag |
332 |
Q |
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| T |
44222 |
caacagaagag |
44212 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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