View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1952_high_34 (Length: 342)
Name: NF1952_high_34
Description: NF1952
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1952_high_34 |
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Alignment Details
Target: chr4 (Bit Score: 119; Significance: 9e-61; HSPs: 9)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 119; E-Value: 9e-61
Query Start/End: Original strand, 130 - 252
Target Start/End: Complemental strand, 27554191 - 27554069
Alignment:
| Q |
130 |
atgtgaagcagataataacttaccagctggagatcaacattatcaaaatgaagaaacatgtcttagacatgtttgcaaaattatgaagtacgtaccaatt |
229 |
Q |
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| T |
27554191 |
atgtgaagcagataataacttaccagctggagatcaacattatcaaaatgaagaaacatgtcttagacatgtttgcaaaattatgaagtacgtaccaatt |
27554092 |
T |
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| Q |
230 |
aatattaatgcatgaacaaatat |
252 |
Q |
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| T |
27554091 |
aatattagtgcatgaacaaatat |
27554069 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 227 - 334
Target Start/End: Complemental strand, 27554057 - 27553950
Alignment:
| Q |
227 |
attaatattaatgcatgaacaaatatgaggttcctcttgtattggacattgtttgaaagggtggggtacaatctaagacaaacaccacatgatatctcat |
326 |
Q |
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| T |
27554057 |
attaatattaatgcatgaacaaatatgaggttcctcttgtattggacattgtttgaaagggtggggtacaatctaagacaaacaccacatgatatctcat |
27553958 |
T |
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| Q |
327 |
cctatgct |
334 |
Q |
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| T |
27553957 |
cctatgct |
27553950 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 147 - 332
Target Start/End: Complemental strand, 27497920 - 27497743
Alignment:
| Q |
147 |
acttaccagctggagatcaacattatcaaaatgaagaaa-catgtcttagacatgtttgcaaaattatgaagtacgtaccaattaatattaatgcatgaa |
245 |
Q |
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| T |
27497920 |
acttaccagctagacatcaacattatcataatgaagaaaacatgtcctaagcctgtttacaaa-ttatggagtagctaccaattaat------gcatgaa |
27497828 |
T |
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| Q |
246 |
caaatatgaggttcctcttgtattggacattgtttgaaagggtggggtacaatctaagacaaacaccacatgatatctcatcctatg |
332 |
Q |
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| T |
27497827 |
-aaatatgaggttgcatttgtattcgagatagtttgatagggtagggtacaatctaagac-aacaccacattatatctcatcctatg |
27497743 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 278 - 334
Target Start/End: Original strand, 27447356 - 27447412
Alignment:
| Q |
278 |
tttgaaagggtggggtacaatctaagacaaacaccacatgatatctcatcctatgct |
334 |
Q |
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| T |
27447356 |
tttgaaagggtggggtacaatctaagacaaacacttcatgatatctcatcctatgct |
27447412 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 150 - 216
Target Start/End: Original strand, 27431871 - 27431937
Alignment:
| Q |
150 |
taccagctggagatcaacattatcaaaatgaagaaacatgtcttagacatgtttgcaaaattatgaa |
216 |
Q |
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| T |
27431871 |
taccagctggacatcaacattatcaagatgaagaaacatgtataatgcatgtttacaaaattatgaa |
27431937 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 141 - 215
Target Start/End: Complemental strand, 27557037 - 27556962
Alignment:
| Q |
141 |
ataataacttaccagctggagatcaacattatcaaaatgaag-aaacatgtcttagacatgtttgcaaaattatga |
215 |
Q |
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| T |
27557037 |
ataatcacttaccagctggaaatcaacactatcataatgaagaaaacatgtctaaagcatgtttacaaaattatga |
27556962 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 147 - 213
Target Start/End: Original strand, 27503432 - 27503499
Alignment:
| Q |
147 |
acttaccagctggagatcaacattatcaaaatgaag-aaacatgtcttagacatgtttgcaaaattat |
213 |
Q |
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| T |
27503432 |
acttatcagctggacatcaacattatcataatgaagaaaacatgtctgaagcatgtttacaaaattat |
27503499 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 147 - 217
Target Start/End: Original strand, 27524031 - 27524102
Alignment:
| Q |
147 |
acttaccagctggagatcaacattatcaaaatgaag-aaacatgtcttagacatgtttgcaaaattatgaag |
217 |
Q |
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| T |
27524031 |
acttaccagctggacatcagcattatcataatgaagaaaacatgtctgaagcatgtttacgaaattatgaag |
27524102 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 147 - 220
Target Start/End: Original strand, 27514400 - 27514474
Alignment:
| Q |
147 |
acttaccagctggagatcaacattatcaaaatgaagaaa-catgtcttagacatgtttgcaaaattatgaagtac |
220 |
Q |
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| T |
27514400 |
acttactagctggacatcagcattatcataatgcagaaaacatgtctaaagcatgtttacaaaattatgaagtac |
27514474 |
T |
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