View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1952_high_35 (Length: 341)
Name: NF1952_high_35
Description: NF1952
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1952_high_35 |
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| [»] scaffold0011 (2 HSPs) |
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| [»] scaffold0364 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 120; Significance: 2e-61; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 130 - 289
Target Start/End: Complemental strand, 22536296 - 22536140
Alignment:
| Q |
130 |
aacatatttgaggatctgaacaagctggtgaaagatagacatgatcccatttacacacataactattaagataagtggactgctctgagagaaagagt-g |
228 |
Q |
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| T |
22536296 |
aacatatttgaggatctgaacaagctggtgaaagatagacatgatcccattcacatacataactatgaagataagtggactgctctaagagaaagagtag |
22536197 |
T |
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| Q |
229 |
acacaattatgtgtgaacttcagaagctatcaattgaattaagctcaaaatcagtctctca |
289 |
Q |
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| T |
22536196 |
acacaattatgtgtgaacttcagaagctatcaattg----aagctcaaaatcagtctctca |
22536140 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 11 - 124
Target Start/End: Complemental strand, 22536499 - 22536386
Alignment:
| Q |
11 |
caaaggactctgatgatgaaatgcctgatgttaatgctgacagtaaccccaaaatctcatctcaataaacaattgatataccttcctcatccacaatcca |
110 |
Q |
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| T |
22536499 |
caaaggactctgacgatgaaatgcctgatgttaatgctcacagtaaccacaacatctcatctcaataaacaattgatataccttcctcatccacaatcca |
22536400 |
T |
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| Q |
111 |
gcctatccaagatc |
124 |
Q |
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| T |
22536399 |
gcctatccaagatc |
22536386 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 66; Significance: 4e-29; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 15 - 124
Target Start/End: Complemental strand, 19750186 - 19750077
Alignment:
| Q |
15 |
ggactctgatgatgaaatgcctgatgttaatgctgacagtaaccccaaaatctcatctcaataaacaattgatataccttcctcatccacaatccagcct |
114 |
Q |
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| T |
19750186 |
ggactttgatgatgaaatgcctgatgttaacgctgacagtaatcctaacatctcatctcaacaaacaattgatataccttcctcatcaacaaatcagctt |
19750087 |
T |
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| Q |
115 |
atccaagatc |
124 |
Q |
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| T |
19750086 |
atccatgatc |
19750077 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 59; Significance: 6e-25; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 136 - 314
Target Start/End: Original strand, 19886812 - 19886987
Alignment:
| Q |
136 |
tttgaggatctgaacaagctggtgaaagatagacatgatcccatttacacacataactattaagataagtggactgctctgagagaaagagt-gacacaa |
234 |
Q |
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| T |
19886812 |
tttgaggatctgaacagactggtgaaagctagaaatgatccaattcacactgagaagtatgaagataagtggactgctctaaaagaaagagtggacacag |
19886911 |
T |
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| Q |
235 |
ttatgtgtgaacttcagaagctatcaattgaattaagctcaaaatcagtctctcattaactggtttaaggatgttgtcaa |
314 |
Q |
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| T |
19886912 |
ttatgtgtgacttgcaaaggctatccattg----aagctcaaaatcagtctctcaacaactggtttaaggaagttatcaa |
19886987 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0011 (Bit Score: 47; Significance: 8e-18; HSPs: 2)
Name: scaffold0011
Description:
Target: scaffold0011; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 15 - 101
Target Start/End: Complemental strand, 60816 - 60730
Alignment:
| Q |
15 |
ggactctgatgatgaaatgcctgatgttaatgctgacagtaaccccaaaatctcatctcaataaacaattgatataccttcctcatc |
101 |
Q |
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| T |
60816 |
ggactctgatgatgaaatacctgatgtttatactgacaataacctcaatatttcatctcaacaaacaattgaaataccttcttcatc |
60730 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0011; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 132 - 227
Target Start/End: Complemental strand, 60616 - 60521
Alignment:
| Q |
132 |
catatttgaggatctgaacaagctggtgaaagatagacatgatcccatttacacacataactattaagataagtggactgctctgagagaaagagt |
227 |
Q |
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|||||||| ||||||||||| ||||||||| | |||| | ||||||||| |||| | || ||| ||||||||||||||||| | ||||||||||| |
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| T |
60616 |
catatttgcggatctgaacatgctggtgaaggctagaaaggatcccattcgcacagagaaatatgaagataagtggactgcttttagagaaagagt |
60521 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0364 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0364
Description:
Target: scaffold0364; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 15 - 56
Target Start/End: Original strand, 8781 - 8822
Alignment:
| Q |
15 |
ggactctgatgatgaaatgcctgatgttaatgctgacagtaa |
56 |
Q |
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| T |
8781 |
ggactctgatgatgaaatgcctgatgttaatgcggacagtaa |
8822 |
T |
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