View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1952_high_39 (Length: 329)
Name: NF1952_high_39
Description: NF1952
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1952_high_39 |
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Alignment Details
Target: chr6 (Bit Score: 229; Significance: 1e-126; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 84 - 328
Target Start/End: Original strand, 9359658 - 9359902
Alignment:
| Q |
84 |
actactagtagcattttgaaagaaggagaaaaatcatatttatccaaagttaaagcctcttttgggaccatgagttcactaaacttgaacaatgatggtt |
183 |
Q |
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| T |
9359658 |
actactagtagcattttgaaagaaggagaaaaatcatatttatccaaagttaaagcctcttttgggaccatgagttcactaaacttgaacaatgatggtt |
9359757 |
T |
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| Q |
184 |
atggtttctctttggacttgaatatttcttcccttccatctccacttccttcttcatcttctactcctcttttgggtcatattggtaacaatgagtctag |
283 |
Q |
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| T |
9359758 |
atggtttctctttggacttgaatatttcttcccttccatctccacttccttcttcatcttctactcctcttttgggtcatatcggtaacaatgaatctag |
9359857 |
T |
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| Q |
284 |
aaagttcaaaataccctttgggatttctaacccttctgtgctcct |
328 |
Q |
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| T |
9359858 |
aaagttcaaaataccctttgggatttctaacccttcagtgatcct |
9359902 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 150 - 309
Target Start/End: Original strand, 9347432 - 9347588
Alignment:
| Q |
150 |
accatgagttcactaaacttgaacaatgatggttatggtttctctttggacttgaatatttcttcccttccatctccacttccttcttcatcttctactc |
249 |
Q |
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| T |
9347432 |
accatgagttcactaaacatgaacaatgatcgttatggtttgtctttagacttgaaaatttc---ccttccatctcaacttacatcatcatcttctactc |
9347528 |
T |
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| Q |
250 |
ctcttttgggtcatattggtaacaatgagtctagaaagttcaaaataccctttgggattt |
309 |
Q |
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| T |
9347529 |
cccttcagggtcatgttgataacaatgaggctgaaaagttcaaaataccctttgggattt |
9347588 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 151 - 318
Target Start/End: Original strand, 9355476 - 9355640
Alignment:
| Q |
151 |
ccatgagttcactaaacttgaacaatgatggttatggtttctctttggacttgaatatttcttcccttccatctccacttccttcttcatcttctactcc |
250 |
Q |
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| T |
9355476 |
ccatgagttcgctaaacttgaacaatgatggttatggtttgtctttggacttgaaaat---ttcccttccatctcaacttccatcatcatcttctactca |
9355572 |
T |
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| Q |
251 |
tcttttgggtcatattggtaacaatgagtctagaaagttcaaaataccctttgggatttctaaccctt |
318 |
Q |
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| T |
9355573 |
ccttcagggtcatgttggtaacaatggttttgaaaagtccaaaataccctttggaatttcgaaccctt |
9355640 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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