View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1952_high_40 (Length: 328)
Name: NF1952_high_40
Description: NF1952
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1952_high_40 |
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Alignment Details
Target: chr8 (Bit Score: 168; Significance: 5e-90; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 168; E-Value: 5e-90
Query Start/End: Original strand, 9 - 188
Target Start/End: Original strand, 41747662 - 41747841
Alignment:
| Q |
9 |
acatcatcaaacacactcatcacttcacacaaatcaacaacatcatgccaaaaactatacaaatacgttacaccgaccctgacgccacggattcttcttc |
108 |
Q |
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| T |
41747662 |
acatcatcaaacacactcatcacttcacacaaatcaacaacatcatgccaaaaactatacaaatacgttacaccgaccctgacgccacggattcttcttc |
41747761 |
T |
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| Q |
109 |
tgacgaagaagaaaatccaacacattccaattttacccctcgctgcagaatcaaaactttcatccacgacattgtgatcg |
188 |
Q |
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| T |
41747762 |
tgacgaagaagaaaatccaatacattccaatattacccctcgccgcagaatcaaaactttcatccacgacattgtgatcg |
41747841 |
T |
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Target: chr8; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 247 - 306
Target Start/End: Original strand, 41747900 - 41747959
Alignment:
| Q |
247 |
tccggcgactcaacggcggccggtgatttgcaccgggaagaaatatcgtggagtgagaca |
306 |
Q |
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| T |
41747900 |
tccggcgactcaacggcggccggtgatttacaccgggaagaaatatcgtggagtgagaca |
41747959 |
T |
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