View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1952_high_47 (Length: 285)
Name: NF1952_high_47
Description: NF1952
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1952_high_47 |
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| [»] chr6 (2 HSPs) |
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| [»] scaffold0117 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 281; Significance: 1e-157; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 1 - 285
Target Start/End: Original strand, 888388 - 888672
Alignment:
| Q |
1 |
atgatcatcaaatgtggcaaaatcaggtagtgatatacatattactgcatcgtgttacgactcgcatatatcgtgagatagcgatgaccatagttataac |
100 |
Q |
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| T |
888388 |
atgatcatcaaatgtggcaaaatcaggtagtgatatacatattactgcatcgtgttacgactcgcatatatcgtgagatagcgatgaccatagttataac |
888487 |
T |
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| Q |
101 |
tactaaatgactaagaacacatatatgatagcattgtagaacctgatttttgcttaaatgacaaaaacagaatttcattaataaaataaaaagcaaatat |
200 |
Q |
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| T |
888488 |
tactaaatgactaagaacacatatatgatagcattgtagaacctgatttttgcttaaatgacaaaaacagaatttcattaataaaataacaagcaaatat |
888587 |
T |
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| Q |
201 |
tgtcatctttattgaaatcctcaaaacataactttctgtgatttctgctaagtgcaaacacagtccataatgtgtgttattagac |
285 |
Q |
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| T |
888588 |
tgtcatctttattgaaatcctcaaaacataactttctgtgatttctgctaagtgcaaacacagtccataatgtgtgttattagac |
888672 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 129; E-Value: 8e-67
Query Start/End: Original strand, 54 - 285
Target Start/End: Complemental strand, 1002938 - 1002699
Alignment:
| Q |
54 |
gttacgactcgcatatatcgtgagatagcgatgaccatagttataactactaaatgactaagaacacata-tatgatagcattgtagaacctgatttttg |
152 |
Q |
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| T |
1002938 |
gttacgactcacatatatcgtgacagagcgacgaccatagttataactactaaatgactaagaacacataatacgatagcattgtagaacctgttttttg |
1002839 |
T |
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| Q |
153 |
cttaaatgacaaaaacagaatttcattaataaaataaaaagcaaatattgtcatctttattgaaatcctcaaaacat---aactttctgtgatttctgct |
249 |
Q |
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| T |
1002838 |
cttaaatggcaaaaacagaatttcattaataaaatagcatgcaaatatttcca---ttattgaaatcctcagaacataacaactttctgtgatttctgct |
1002742 |
T |
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| Q |
250 |
aag-------tgcaaacacagtccataatgtgtgttattagac |
285 |
Q |
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| T |
1002741 |
aagtgcaaactgcaaacacagtccataatgtgtgttattagac |
1002699 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0117 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0117
Description:
Target: scaffold0117; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 16418 - 16373
Alignment:
| Q |
1 |
atgatcatcaaatgtggcaaaatcaggtagtgatatacatattact |
46 |
Q |
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| T |
16418 |
atgatcatcacatgtggcaaaatcaggtagtaatatacatattact |
16373 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 141 - 186
Target Start/End: Complemental strand, 7553384 - 7553339
Alignment:
| Q |
141 |
acctgatttttgcttaaatgacaaaaacagaatttcattaataaaa |
186 |
Q |
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| T |
7553384 |
acctggtttttgcttaaatgacaaaaaccgaattgcattaataaaa |
7553339 |
T |
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