View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1952_high_48 (Length: 281)
Name: NF1952_high_48
Description: NF1952
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1952_high_48 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 215; Significance: 1e-118; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 17 - 259
Target Start/End: Original strand, 48714221 - 48714463
Alignment:
| Q |
17 |
caccttcgtcattctcctcgtctccgacgtttttggtactgttctattgcctttccttcttatctatgactgattattttgaggaggtcatggtttcata |
116 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
48714221 |
caccttcgtcattctcctcgtctccgacatttttggtactgttctattgcctttccttcttatctatggctgattattttgaggaggtcatggtttcata |
48714320 |
T |
|
| Q |
117 |
tattgaatgcatctacacatgtttaacagtttttgtcttcacatgcttaatttgttttgtaggatataaagccccaattttaaggtatgatgatgattac |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
48714321 |
tattgaatgcatctacacatgtttaacagtttttgtcttcacatgcttaatttgttttgtaggatataaagccccaattttaaggtatgatgataattat |
48714420 |
T |
|
| Q |
217 |
aaattctcacgtttttcaatatgaaatgctgatattaagcgct |
259 |
Q |
| |
|
||||||||||||||||||||||||||| ||||| |||||||| |
|
|
| T |
48714421 |
caattctcacgtttttcaatatgaaatgttgatactaagcgct |
48714463 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 153 - 260
Target Start/End: Original strand, 47165691 - 47165797
Alignment:
| Q |
153 |
cttcacatgcttaatttgttttgtaggatataaagccccaattttaaggtatgatgatgattacaaattctcacgtttttcaatatgaaatgctgatatt |
252 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||| ||||| | |
|
|
| T |
47165691 |
cttcacttgcttaatttgttttgtaggatataaagccccaattttaaggtatgatgatgattaccaattctcacg-ttttcaatatgaaatgttgatact |
47165789 |
T |
|
| Q |
253 |
aagcgctc |
260 |
Q |
| |
|
|| ||||| |
|
|
| T |
47165790 |
aaacgctc |
47165797 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 91 - 152
Target Start/End: Original strand, 47165602 - 47165666
Alignment:
| Q |
91 |
tattttgaggaggtcatggtttcatatattgaatgcatcta---cacatgtttaacagtttttgt |
152 |
Q |
| |
|
||||||||| | ||||||||||||||||||||||||||||| |||||||| |||||||||||| |
|
|
| T |
47165602 |
tattttgagtatgtcatggtttcatatattgaatgcatctacatcacatgttgaacagtttttgt |
47165666 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 153 - 207
Target Start/End: Original strand, 48696083 - 48696137
Alignment:
| Q |
153 |
cttcacatgcttaatttgttttgtaggatataaagccccaattttaaggtatgat |
207 |
Q |
| |
|
|||||||||||| |||||||||||||||||| || | |||||| ||||||||||| |
|
|
| T |
48696083 |
cttcacatgctttatttgttttgtaggatatgaatctccaattataaggtatgat |
48696137 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University