View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1952_high_5 (Length: 588)
Name: NF1952_high_5
Description: NF1952
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1952_high_5 |
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Alignment Details
Target: chr6 (Bit Score: 335; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 19 - 574
Target Start/End: Complemental strand, 9389483 - 9388928
Alignment:
| Q |
19 |
tttttatgtctaaaatttgaaatccgaaatctacatatattatgtactgttcttaccatctaataagctgacgaagatttctacttaatatatagtcata |
118 |
Q |
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| T |
9389483 |
tttttttgtctgtaatttgaaatccgaatcctgcatatattatgtactgtccctatcaactattaaactgacgaagacttctatttaatatatagtcata |
9389384 |
T |
|
| Q |
119 |
tgtatttcatttttgattaaaattaaacaccaaattagtgtgaatagtggattttactaaaacaagagaagagatatggtattttactaaaattagtaag |
218 |
Q |
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|||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9389383 |
tgtatttcatatttgattaaaattaaacaccaaattagtgaaaatagtggattttactaaaacaagagaagagatatggtattttactaaaattagtaag |
9389284 |
T |
|
| Q |
219 |
agtctctctttaa--nnnnnnnnnnnnnngagattcatataaatgcacccgtttactaaccgacctctcttggctatcatcaccaagtacatgtcatggg |
316 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
9389283 |
agtctctctttaattttttgttttgttttgagattcatataaatgcacccgtttactaaccgacctctcctggctatcatcaccaagtacatgtcatggg |
9389184 |
T |
|
| Q |
317 |
gttgaattttaatagtgagaaaagaaattcaatgcatactgctcccatannnnnnncagcattaaannnnnnnctcacttttaatttatactagtttgta |
416 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||| ||||||||| |||||| |
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| T |
9389183 |
gttggattttaatagtgagaaaagaaattcaatgcatactgctcccatatttttttcagcattaaatttttttctcacttttattttatacta-tttgta |
9389085 |
T |
|
| Q |
417 |
agagttgaagacgtctacctacttaataaaaattcatcccatatttactactcaattgtaattaagcctatgcaaccatccaaaaaatttcgtgtggtta |
516 |
Q |
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|||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||| ||||||||| |
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| T |
9389084 |
agagttgaagacgtctgcctaattaataaaaattcatcccatatttactactcaattgttattaagcctatgcaaccatccaaatttttttgtgtggtta |
9388985 |
T |
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| Q |
517 |
aaaccatctaattttgtattaaaaagtcttgatttaaatgtaatagcaggagtattat |
574 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||| |
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| T |
9388984 |
aaaccatctaattttgtatt-aaaagtcttgatttaaatgtaatagcaagagtattat |
9388928 |
T |
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