View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1952_high_50 (Length: 269)
Name: NF1952_high_50
Description: NF1952
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1952_high_50 |
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Alignment Details
Target: chr5 (Bit Score: 125; Significance: 2e-64; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 16 - 160
Target Start/End: Complemental strand, 3821032 - 3820888
Alignment:
| Q |
16 |
agaacaatatcacgacaatcaggcaccaccagcaacaaaataaaactgcaatcaacaaatgaagacaaaacccatataaaatgaaaggtaaaaccaaccc |
115 |
Q |
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| T |
3821032 |
agaacaatatcaccacaatcagacaccaccagcaacaaaataaaactgcaatcaacaaaagaagacaaaatccatataaaatgaaaggtaaaaccaaccc |
3820933 |
T |
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| Q |
116 |
caccacagagaaattatggacccgaattgaagtaccgccggaaat |
160 |
Q |
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| T |
3820932 |
caccacagagaaattatggacccgaattgaagtaccgcccgaaat |
3820888 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 108; Significance: 3e-54; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 41 - 239
Target Start/End: Original strand, 55861129 - 55861328
Alignment:
| Q |
41 |
ccaccagcaacaaaataaaactgcaatcaacaaatgaagacaaaacccatataaaatgaaaggtaaaaccaaccccaccacagagaaattatggacccga |
140 |
Q |
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| T |
55861129 |
ccaccaacaacaaaacaaaactgcaatcaacaaaagaagacaaaacccatacaaaatgaaaggcaaatataaccccaccacaaagaaattatggacccga |
55861228 |
T |
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| Q |
141 |
attgaagtaccgccgg-aaattgttcaagtaacggccccattatttgacaaatccaactacaatctctgcaaaatccgtattaacatcgcgaacgcgcga |
239 |
Q |
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| T |
55861229 |
attgaaggacaactggaaaattcttcaagtaccggccccattatctgacaaatccaactaaaatctctgcacaatccgtatgaacgtcgggaacgcgcga |
55861328 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 89; Significance: 6e-43; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 42 - 239
Target Start/End: Complemental strand, 16700203 - 16700004
Alignment:
| Q |
42 |
caccagcaacaaaataaaactgcaatcaacaaatgaagacaaaacccatataaaatgaaaggtaaaaccaaccccaccacagagaaattatggacccgaa |
141 |
Q |
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| T |
16700203 |
caccaacaacaaaacaaaactgcaatcagcaaaagatgacaaaaccctaataaaatgaaaggctaatccaaccccaccatagagaaattattgtcccgaa |
16700104 |
T |
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| Q |
142 |
ttgaagtaccgccggaaattgttcaagtaacggccccattatttgacaaatccaactacaatctctg--caaaatccgtattaacatcgcgaacgcgcga |
239 |
Q |
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| T |
16700103 |
tcgaagtaccgtcggaaatttttcaagtatcggtcccattacctgacaaatccaactacaatccatgcacacaatctgtattaacatcgggaacgcgcga |
16700004 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 72; Significance: 8e-33; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 41 - 152
Target Start/End: Complemental strand, 29273427 - 29273316
Alignment:
| Q |
41 |
ccaccagcaacaaaataaaactgcaatcaacaaatgaagacaaaacccatataaaatgaaaggtaaaaccaaccccaccacagagaaattatggacccga |
140 |
Q |
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|||||| |||||||| ||||||||||||||||| |||||||||||||||| ||||||||||| ||| | |||||||||||| ||||||||||||||||| |
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| T |
29273427 |
ccaccaacaacaaaacgaaactgcaatcaacaaaagaagacaaaacccatacaaaatgaaaggcaaatctaaccccaccacaaagaaattatggacccga |
29273328 |
T |
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| Q |
141 |
attgaagtaccg |
152 |
Q |
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||| |||||||| |
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| T |
29273327 |
attcaagtaccg |
29273316 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 163 - 239
Target Start/End: Complemental strand, 29273326 - 29273250
Alignment:
| Q |
163 |
ttcaagtaacggccccattatttgacaaatccaactacaatctctgcaaaatccgtattaacatcgcgaacgcgcga |
239 |
Q |
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|||||||| |||||||||||| ||||||||||||||| |||||||||| ||||||||| ||| ||| |||||||||| |
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| T |
29273326 |
ttcaagtaccggccccattatctgacaaatccaactaaaatctctgcacaatccgtatgaacgtcgggaacgcgcga |
29273250 |
T |
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