View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1952_high_55 (Length: 250)
Name: NF1952_high_55
Description: NF1952
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1952_high_55 |
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Alignment Details
Target: chr4 (Bit Score: 113; Significance: 2e-57; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 1 - 113
Target Start/End: Complemental strand, 27553962 - 27553850
Alignment:
| Q |
1 |
ctcatcctatgctctctattattttaccgtttcatacaatcatttagcctggaattgggtttctatttcaaaagaacctcattatctataaataaaagat |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27553962 |
ctcatcctatgctctctattattttaccgtttcatacaatcatttagcctggaattgggtttctatttcaaaagaacctcattatctataaataaaagat |
27553863 |
T |
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| Q |
101 |
aatgaatgataaa |
113 |
Q |
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| T |
27553862 |
aatgaatgataaa |
27553850 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 131 - 239
Target Start/End: Complemental strand, 27553801 - 27553693
Alignment:
| Q |
131 |
ttattctaataaactacataaaatagataagaaacttgtgtttatgaggtaccttcccttcacagtgacttagtattgaggttaattattcccttgaatc |
230 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27553801 |
ttattctaataaactacataaaatagataagaaacttgtgtttatgaggtaccttcccttcacagtgacttagtattgaggttaattattcccttgaatc |
27553702 |
T |
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| Q |
231 |
agccttcat |
239 |
Q |
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||||||||| |
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| T |
27553701 |
agccttcat |
27553693 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 27447400 - 27447461
Alignment:
| Q |
1 |
ctcatcctatgctctctattattttaccgtttcatacaatcatttagcctggaattgggttt |
62 |
Q |
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| T |
27447400 |
ctcatcctatgctctctattattttaccctttcatacagccatttagctttgaattgggttt |
27447461 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 94
Target Start/End: Complemental strand, 27497753 - 27497660
Alignment:
| Q |
1 |
ctcatcctatgctctctattattttaccgtttcatacaatcatttagcctggaattgggtttctatttcaaaagaacctcattatctataaata |
94 |
Q |
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||||||||||| |||||||||||||||| ||||| | ||| |||| || |||||||||||||| |||||| ||||||||| || |||||||| |
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| T |
27497753 |
ctcatcctatgttctctattattttaccctttcaaaaaattattttgcttggaattgggtttcagtttcaagagaacctcaataattataaata |
27497660 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 4 - 94
Target Start/End: Original strand, 27489752 - 27489843
Alignment:
| Q |
4 |
atcctatgctctctattattttaccgtttcatacaatca-tttagcctggaattgggtttctatttcaaaagaacctcattatctataaata |
94 |
Q |
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|||||||| |||||| ||||||||| ||||| ||||| | ||| || |||||||||||||| ||||||| | || |||| || ||||||||| |
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| T |
27489752 |
atcctatgttctctaatattttaccctttcaaacaataacttttgcttggaattgggtttcaatttcaagataatctcaataactataaata |
27489843 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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