View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1952_high_61 (Length: 242)

Name: NF1952_high_61
Description: NF1952
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1952_high_61
NF1952_high_61
[»] chr8 (10 HSPs)
chr8 (1-229)||(2916172-2916403)
chr8 (52-147)||(3170365-3170460)
chr8 (21-229)||(2711350-2711558)
chr8 (1-228)||(3002165-3002394)
chr8 (133-212)||(2911307-2911386)
chr8 (23-99)||(3282564-3282640)
chr8 (61-118)||(2989289-2989346)
chr8 (53-117)||(9851196-9851260)
chr8 (41-98)||(3142250-3142307)
chr8 (28-80)||(2911244-2911296)
[»] chr1 (1 HSPs)
chr1 (52-229)||(10755755-10755932)
[»] scaffold0065 (1 HSPs)
scaffold0065 (60-229)||(45297-45466)
[»] chr7 (1 HSPs)
chr7 (16-229)||(3919211-3919424)
[»] chr6 (1 HSPs)
chr6 (21-118)||(18355689-18355786)


Alignment Details
Target: chr8 (Bit Score: 218; Significance: 1e-120; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 229
Target Start/End: Original strand, 2916172 - 2916403
Alignment:
Q  1 atcaaggagacattgt---ttctatgtggttgcctcaataaatttacaatctcttttttattatcttctctaccaatgatatctgattctaatacaaaag 97  Q
    ||||||||||||||||   |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2916172 atcaaggagacattgtggtttctatgtggttgcctcaataaatttacaatctcttttttattatcttctctaccaatgatatctgattctaatacaaaag 2916271  T
Q  98 agcaagtttctctccttacatcgtcactttgcttcaccaccacaacattttggctcaaattcaacttagtcatttcatccactacatcattaaatatttt 197  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2916272 agcaagtttctctccttacatcgtcactttgcttcaccaccacaacattttggctcaaattcaacttagtcatttcatccactacatcattaaatatttt 2916371  T
Q  198 tcttattttttcaatctctcgagccattttac 229  Q
    ||||||||||||||||||||||||||||||||    
T  2916372 tcttattttttcaatctctcgagccattttac 2916403  T

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Target: chr8; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 52 - 147
Target Start/End: Original strand, 3170365 - 3170460
Alignment:
Q  52 tttttattatcttctctaccaatgatatctgattctaatacaaaagagcaagtttctctccttacatcgtcactttgcttcaccaccacaacattt 147  Q
    ||||||| ||||||||| |||||||| ||||||||||| |||||||| |  ||||| |||||||||  |||||||||||  |||||||||||||||    
T  3170365 tttttatcatcttctcttccaatgatctctgattctaacacaaaagaacttgtttccctccttacaatgtcactttgctcaaccaccacaacattt 3170460  T

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Target: chr8; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 21 - 229
Target Start/End: Original strand, 2711350 - 2711558
Alignment:
Q  21 atgtggttgcctcaataaatttacaatctcttttttattatcttctctaccaatgatatctgattctaatacaaaagagcaagtttctctccttacatcg 120  Q
    ||||| ||||||||| ||  ||| |||||  ||||||| ||||||||| ||||| || ||||||||||| |||||||| | | |||| |||||||||||     
T  2711350 atgtgattgcctcaacaagcttataatcttctttttatcatcttctcttccaataatctctgattctaacacaaaagaactactttccctccttacatca 2711449  T
Q  121 tcactttgcttcaccaccacaacattttggctcaaattcaacttagtcatttcatccactacatcattaaatatttttcttattttttcaatctctcgag 220  Q
    | | ||| ||| ||||||||||||||   | | | |||||||  || ||| || | ||| ||||||||||   |||||  |||||||||||||||  |||    
T  2711450 ttagttttcttaaccaccacaacattggagttaagattcaacacagacatatctttcacaacatcattaacacttttttgtattttttcaatctcatgag 2711549  T
Q  221 ccattttac 229  Q
    |||||||||    
T  2711550 ccattttac 2711558  T

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Target: chr8; HSP #4
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 1 - 228
Target Start/End: Complemental strand, 3002394 - 3002165
Alignment:
Q  1 atcaaggagacatt---gtttctatgtggttgcctcaataaatttacaatctcttttttattatcttctctaccaatgatatctgattctaatacaaaag 97  Q
    ||||||||||||||   ||||| ||||||||| ||||| |  | || |||||| |||||||  |||||||| ||||||||||| |||||||| || ||||    
T  3002394 atcaaggagacattttggtttccatgtggttgtctcaaaaggtgtataatctcctttttatcgtcttctcttccaatgatatccgattctaacaccaaag 3002295  T
Q  98 agcaagtttctctccttacatcgtcactttgcttcaccaccacaacattttggctcaaattcaacttagtcatttcatccactacatcattaaatatttt 197  Q
    | | |||||| |||| ||||| || | |||| |  ||||||||||||||| || | | |||| ||  || ||| || | ||| |||||||||||  ||||    
T  3002294 aactagtttccctccctacattgtaattttgttcaaccaccacaacatttgggtttagattc-acccagacatatctttcacaacatcattaaaactttt 3002196  T
Q  198 tcttattttttcaatctctcgagccatttta 228  Q
    |  |||||||||||||||  |||||||||||    
T  3002195 ttgtattttttcaatctcaagagccatttta 3002165  T

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Target: chr8; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 133 - 212
Target Start/End: Original strand, 2911307 - 2911386
Alignment:
Q  133 accaccacaacattttggctcaaattcaacttagtcatttcatccactacatcattaaatatttttcttattttttcaat 212  Q
    |||||||  ||||||||||| ||||||||||| | |||||| ||||||||||| |||||||||||||  |||||||||||    
T  2911307 accaccattacattttggcttaaattcaacttggacatttcgtccactacatcgttaaatatttttcgaattttttcaat 2911386  T

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Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 23 - 99
Target Start/End: Original strand, 3282564 - 3282640
Alignment:
Q  23 gtggttgcctcaataaatttacaatctcttttttattatcttctctaccaatgatatctgattctaatacaaaagag 99  Q
    ||||||||||||| | ||||| |||||| ||||||| ||||||||| ||| |||||| ||||||||| | |||||||    
T  3282564 gtggttgcctcaagagatttataatctcctttttatcatcttctcttccattgatatttgattctaacaaaaaagag 3282640  T

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Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 61 - 118
Target Start/End: Complemental strand, 2989346 - 2989289
Alignment:
Q  61 tcttctctaccaatgatatctgattctaatacaaaagagcaagtttctctccttacat 118  Q
    |||||||| |||||||| || |||||||| ||| ||||||||||||| ||||||||||    
T  2989346 tcttctcttccaatgatctcagattctaacacataagagcaagtttccctccttacat 2989289  T

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Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 53 - 117
Target Start/End: Original strand, 9851196 - 9851260
Alignment:
Q  53 ttttattatcttctctaccaatgatatctgattctaatacaaaagagcaagtttctctccttaca 117  Q
    |||||| ||||||||| ||||||||||| ||||| || |||||||| | ||| ||||||||||||    
T  9851196 ttttatcatcttctcttccaatgatatccgattccaacacaaaagaactagtctctctccttaca 9851260  T

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Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 41 - 98
Target Start/End: Original strand, 3142250 - 3142307
Alignment:
Q  41 ttacaatctcttttttattatcttctctaccaatgatatctgattctaatacaaaaga 98  Q
    ||||||| || ||||||| ||| ||||| |||||||||||||| ||||| ||||||||    
T  3142250 ttacaatgtcatttttatcatcatctcttccaatgatatctgactctaacacaaaaga 3142307  T

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Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 28 - 80
Target Start/End: Original strand, 2911244 - 2911296
Alignment:
Q  28 tgcctcaataaatttacaatctcttttttattatcttctctaccaatgatatc 80  Q
    |||||||||||| ||| |||||||||||| |||| |||||| || ||||||||    
T  2911244 tgcctcaataaacttataatctcttttttgttattttctcttccgatgatatc 2911296  T

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Target: chr1 (Bit Score: 50; Significance: 9e-20; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 52 - 229
Target Start/End: Original strand, 10755755 - 10755932
Alignment:
Q  52 tttttattatcttctctaccaatgatatctgattctaatacaaaagagcaagtttctctccttacatcgtcactttgcttcaccaccacaacattttggc 151  Q
    ||||||| || |||||| |||||||||| ||||||||| |||||||| | |||||| ||||||||||||| | ||| ||  ||||| |||||||||  |     
T  10755755 tttttatcatattctcttccaatgatatttgattctaacacaaaagaactagtttccctccttacatcgttagttttctcaaccactacaacatttgagt 10755854  T
Q  152 tcaaattcaacttagtcatttcatccactacatcattaaatatttttcttattttttcaatctctcgagccattttac 229  Q
    | | |||||||  || ||| || | ||| |||||||||||   ||||  |||||||||||||||| ||||||||||||    
T  10755855 taagattcaacccagacatatctttcaccacatcattaaaacctttttgtattttttcaatctctagagccattttac 10755932  T

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Target: scaffold0065 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: scaffold0065
Description:

Target: scaffold0065; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 60 - 229
Target Start/End: Complemental strand, 45466 - 45297
Alignment:
Q  60 atcttctctaccaatgatatctgattctaatacaaaagagcaagtttctctccttacatcgtcactttgcttcaccaccacaacattttggctcaaattc 159  Q
    ||||||||| || ||||||||||||||| | |||||||| |  ||||| |||||||||  |||||||||||  |||||||||||||||  | | | ||||    
T  45466 atcttctcttccgatgatatctgattctgacacaaaagaacttgtttccctccttacaatgtcactttgctcaaccaccacaacatttgagtttagattc 45367  T
Q  160 aacttagtcatttcatccactacatcattaaatatttttcttattttttcaatctctcgagccattttac 229  Q
    |||  || ||| || | ||| || ||||||||| || ||  |||||||||||||||  ||||||||||||    
T  45366 aacccagacatatctttcaccacgtcattaaattttgtttgtattttttcaatctcatgagccattttac 45297  T

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Target: chr7 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 16 - 229
Target Start/End: Original strand, 3919211 - 3919424
Alignment:
Q  16 tttctatgtggttgcctcaataaatttacaatctcttttttattatcttctctaccaatgatatctgattctaatacaaaagagcaagtttctctcctta 115  Q
    |||| |||||||||| |||| ||  ||| |||||  ||||||| ||||||||| ||||||||||| ||||||||  |||| || |  ||||| |||||||    
T  3919211 tttccatgtggttgcatcaacaagcttataatcttctttttatcatcttctcttccaatgatatccgattctaacgcaaatgaacttgtttccctcctta 3919310  T
Q  116 catcgtcactttgcttcaccaccacaacattttggctcaaattcaacttagtcatttcatccactacatcattaaatatttttcttattttttcaatctc 215  Q
    ||   | | |||| |  |||||||||||||||  | | | |||||||  || ||| |||| ||| |||||||||||| || ||  || ||||||||||||    
T  3919311 cactcttagtttgttgaaccaccacaacatttgagtttagattcaacccagacatatcattcaccacatcattaaattttgtttgtagtttttcaatctc 3919410  T
Q  216 tcgagccattttac 229  Q
      ||||||||||||    
T  3919411 atgagccattttac 3919424  T

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Target: chr6 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 21 - 118
Target Start/End: Complemental strand, 18355786 - 18355689
Alignment:
Q  21 atgtggttgcctcaataaatttacaatctcttttttattatcttctctaccaatgatatctgattctaatacaaaagagcaagtttctctccttacat 118  Q
    ||||| ||||||||| ||  ||| |||||  |||||||  |||||||| |||||||| || |||||||| ||| ||||||||||||| ||||||||||    
T  18355786 atgtgattgcctcaacaagcttataatcttgtttttatcttcttctcttccaatgatctcagattctaacacataagagcaagtttccctccttacat 18355689  T

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