View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1952_high_63 (Length: 234)
Name: NF1952_high_63
Description: NF1952
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1952_high_63 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 116; Significance: 4e-59; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 68 - 183
Target Start/End: Complemental strand, 9359536 - 9359421
Alignment:
| Q |
68 |
taaaatccatgactgagttacatgaatgagagaagaaagacaacgtttcaaagaagaggtaaagtacaaattaaaaagatgtattttattaagttatttt |
167 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9359536 |
taaaatccatgactgagttacatgaatgagagaagaaagacaacgtttcaaagaagaggtaaagtacaaattaaaaagatgtattttattaagttatttt |
9359437 |
T |
|
| Q |
168 |
catttcctacaaactt |
183 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
9359436 |
catttcctacaaactt |
9359421 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 19 - 54
Target Start/End: Complemental strand, 9359591 - 9359556
Alignment:
| Q |
19 |
atataaagggatcattcaattgcattgtaaagtttg |
54 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
9359591 |
atataaagggatcattcaattgcattgtaaagtttg |
9359556 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University