View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1952_high_69 (Length: 218)
Name: NF1952_high_69
Description: NF1952
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1952_high_69 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 183; Significance: 4e-99; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 6 - 200
Target Start/End: Complemental strand, 33005433 - 33005239
Alignment:
| Q |
6 |
tggagaagcaaaggccaaagtctgttttgtatgtgtcctttggaagtagaggaagtttatctcaagagcagattaatgaactagctttagggttagagct |
105 |
Q |
| |
|
||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
33005433 |
tggagaatcaaagaccaaagtctgttttgtatgtgtcctttggaagtagaggaagtttatctcaagagcagatcaatgaactagctttagggttagagct |
33005334 |
T |
|
| Q |
106 |
gagtggtcaaaaattcttgtgggttttgagagaacctaataattctgaaattctaggtgaccatagtgctaaaaatgaccctttaaaatacttac |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33005333 |
gagtggtcaaaaattcttgtgggttttgagagaacctaataattctgaaattctaggtgaccatagtgctaaaaatgaccctttaaaatacttac |
33005239 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 6 - 151
Target Start/End: Complemental strand, 3778197 - 3778052
Alignment:
| Q |
6 |
tggagaagcaaaggccaaagtctgttttgtatgtgtcctttggaagtagaggaagtttatctcaagagcagattaatgaactagctttagggttagagct |
105 |
Q |
| |
|
||||||| |||| ||||| ||||||||||||| |||||||||||| | | | |||||||||| ||||||| ||||||||||| |||||||||||| | |
|
|
| T |
3778197 |
tggagaatcaaacaccaaacactgttttgtatgtctcctttggaagtgcatgcactttatctcaacagcagatcaatgaactagcattagggttagaggt |
3778098 |
T |
|
| Q |
106 |
gagtggtcaaaaattcttgtgggttttgagagaacctaataattct |
151 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||| ||||||| |
|
|
| T |
3778097 |
gagtggtcagaaattcttgtgggttttgagagaacctagtaattct |
3778052 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 6 - 151
Target Start/End: Original strand, 3700892 - 3701037
Alignment:
| Q |
6 |
tggagaagcaaaggccaaagtctgttttgtatgtgtcctttggaagtagaggaagtttatctcaagagcagattaatgaactagctttagggttagagct |
105 |
Q |
| |
|
||||||| |||| ||||| || ||||||||||| | |||||||||| |||||| |||||||||| | || || |||||||||||||| ||||| ||| | |
|
|
| T |
3700892 |
tggagaatcaaacaccaaactcagttttgtatgtctgctttggaagtggaggaactttatctcaacaacaaatcaatgaactagctttggggttggagtt |
3700991 |
T |
|
| Q |
106 |
gagtggtcaaaaattcttgtgggttttgagagaacctaataattct |
151 |
Q |
| |
|
|||| ||| |||||||||||||||||||||||||||| ||||||| |
|
|
| T |
3700992 |
gagtaatcagaaattcttgtgggttttgagagaacctagtaattct |
3701037 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 6 - 143
Target Start/End: Original strand, 3707659 - 3707796
Alignment:
| Q |
6 |
tggagaagcaaaggccaaagtctgttttgtatgtgtcctttggaagtagaggaagtttatctcaagagcagattaatgaactagctttagggttagagct |
105 |
Q |
| |
|
||||||| |||| ||||| || ||||||||||||| |||||||||| |||||| |||||||||| | || | |||||||||||||| ||| | || | |
|
|
| T |
3707659 |
tggagaatcaaacaccaaactcagttttgtatgtgtgctttggaagtggaggaactttatctcaacaacaaaccaatgaactagctttggggctggaatt |
3707758 |
T |
|
| Q |
106 |
gagtggtcaaaaattcttgtgggttttgagagaaccta |
143 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
3707759 |
gagtggtcagaaattcttgtgggttttgagagaaccta |
3707796 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 6 - 143
Target Start/End: Complemental strand, 3770536 - 3770399
Alignment:
| Q |
6 |
tggagaagcaaaggccaaagtctgttttgtatgtgtcctttggaagtagaggaagtttatctcaagagcagattaatgaactagctttagggttagagct |
105 |
Q |
| |
|
||||||| |||| ||||| || ||||||||||| | |||||||||| |||||| ||| |||||| | || | |||||||||||||| ||| | ||| | |
|
|
| T |
3770536 |
tggagaatcaaacaccaaactcagttttgtatgtctgctttggaagtggaggaactttttctcaacaacaaaccaatgaactagctttggggctggagtt |
3770437 |
T |
|
| Q |
106 |
gagtggtcaaaaattcttgtgggttttgagagaaccta |
143 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
3770436 |
gagtggtcagaaattcttgtgggttttgagagaaccta |
3770399 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 6 - 141
Target Start/End: Original strand, 3719168 - 3719303
Alignment:
| Q |
6 |
tggagaagcaaaggccaaagtctgttttgtatgtgtcctttggaagtagaggaagtttatctcaagagcagattaatgaactagctttagggttagagct |
105 |
Q |
| |
|
||||||| |||| ||||| || ||||||||||| | |||||||||| |||||| |||||||||| | ||||| |||||| ||||||| | ||| ||| | |
|
|
| T |
3719168 |
tggagaatcaaacaccaaactcagttttgtatgtctgctttggaagtggaggaactttatctcaacaacagatcaatgaattagctttggcgttggagtt |
3719267 |
T |
|
| Q |
106 |
gagtggtcaaaaattcttgtgggttttgagagaacc |
141 |
Q |
| |
|
|||| ||| ||||| |||||||||||||||||||| |
|
|
| T |
3719268 |
gagtaatcagaaatttttgtgggttttgagagaacc |
3719303 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University