View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1952_high_70 (Length: 211)
Name: NF1952_high_70
Description: NF1952
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1952_high_70 |
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Alignment Details
Target: chr2 (Bit Score: 120; Significance: 1e-61; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 120; E-Value: 1e-61
Query Start/End: Original strand, 16 - 201
Target Start/End: Complemental strand, 12076677 - 12076496
Alignment:
| Q |
16 |
cacagagttccgtcgacacaacagagcaagtgttgagcctattgtagaaatcgcgaatgaatctaccatgagaatctctaatcaatcatccacaatggtg |
115 |
Q |
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| T |
12076677 |
cacagagttccgtcgatacaacagagcaagtgttgagtctattgtagaaatcgcgaatgaatctaccacgagaatctctaatcaatcatccacaa----a |
12076582 |
T |
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| Q |
116 |
nnnnnnnacgagcccatcaacttcatagtagttgagtggtggaagttcccaagaaacctcgatgatgcgtctcatagggtgaaact |
201 |
Q |
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| T |
12076581 |
tagaatctctggcccatcaacttcatagtagttgagtggtggaagttcccaagaaacctcgatgatgcgtctcatagggtgaaact |
12076496 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 13 - 110
Target Start/End: Complemental strand, 12054824 - 12054727
Alignment:
| Q |
13 |
gagcacagagttccgtcgacacaacagagcaagtgttgagcctattgtagaaatcgcgaatgaatctaccatgagaatctctaatcaatcatccacaa |
110 |
Q |
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| T |
12054824 |
gagcacagagttctgccgacacagcagatcaagttttgagtctattttagaaatcgtgaatgaatctaccacgaggatctctagttattcatccacaa |
12054727 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 140 - 202
Target Start/End: Complemental strand, 12054687 - 12054625
Alignment:
| Q |
140 |
atagtagttgagtggtggaagttcccaagaaacctcgatgatgcgtctcatagggtgaaactg |
202 |
Q |
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| T |
12054687 |
atagtagttgaatggtggaggtttccaagaaacctcaatgatgtgtcacatagggtgaaactg |
12054625 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 162 - 199
Target Start/End: Complemental strand, 12075208 - 12075171
Alignment:
| Q |
162 |
tcccaagaaacctcgatgatgcgtctcatagggtgaaa |
199 |
Q |
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| T |
12075208 |
tcccaagaaacctcaatgacgcgtctcatagggtgaaa |
12075171 |
T |
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