View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1952_high_9 (Length: 546)
Name: NF1952_high_9
Description: NF1952
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1952_high_9 |
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Alignment Details
Target: chr7 (Bit Score: 423; Significance: 0; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 423; E-Value: 0
Query Start/End: Original strand, 11 - 529
Target Start/End: Complemental strand, 13644235 - 13643718
Alignment:
| Q |
11 |
cacagacacaattgctaaccacttccaaacaccaaacaaaatatccatggcaactttattggtaataaacaaagacaacaccttaagggtttctatatat |
110 |
Q |
| |
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|||| ||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13644235 |
cacaaacacaattggtaaccactttcaaacaccaaacaaaatatccatggcaactttattggtaataaacaaagacaacaccttaagggtttctatatat |
13644136 |
T |
|
| Q |
111 |
cttctccatgaggtcaatttcctgctttataggaatttcaggaaaaaactccattccatttgatccaaacccacttgccattccatcatcatcattgaac |
210 |
Q |
| |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13644135 |
cttctccatgaggtcaatttcctgctttttaggaatttcaggaaaaaactccattccatttgatccaaacccacttgccattccatcatcatcattgaac |
13644036 |
T |
|
| Q |
211 |
atcattggcacatagccaccaatttcatcttttggagtagacaaaccttcagagaaaaaatcactctcagaacttttcataatttggctgattcccgata |
310 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
13644035 |
atcattggcacatagccaccaatttcatcttctggagtagtcaaaccttcagagaaaaaatcactctcagaac-tttcataatttggctgattcccgata |
13643937 |
T |
|
| Q |
311 |
ttcatcatgctcagagaattattcatcatctccttttcaactttcttggcagaagtgacttccattatgtatttcaaaagtagtgttgcctttgaactgt |
410 |
Q |
| |
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||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||| |||||||||||| |
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| T |
13643936 |
ttcatcatgctcagagaattagtcatcatctccttttcaactttcttggcacaagtgacttccattatgtatttcaaaagcagtgttccctttgaactgt |
13643837 |
T |
|
| Q |
411 |
taccttgattctttttcttgggtttttggcggcgcttagtggcgttccagtggtttttaaagtagttctccgtgcgccccgacaatctccttgcaatttc |
510 |
Q |
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||||| ||||||||||||||| ||| ||| |||||||||||||||||| |||||||| | | ||||||| ||||||||||||||||| |||| |||||| |
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| T |
13643836 |
tacctcgattctttttcttggctttcaggcagcgcttagtggcgttccaatggtttttgacggagttctcggtgcgccccgacaatcttcttgaaatttc |
13643737 |
T |
|
| Q |
511 |
cgcccacttgttaccaact |
529 |
Q |
| |
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||||||||||||||||||| |
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| T |
13643736 |
cgcccacttgttaccaact |
13643718 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 415; E-Value: 0
Query Start/End: Original strand, 11 - 529
Target Start/End: Complemental strand, 13706684 - 13706167
Alignment:
| Q |
11 |
cacagacacaattgctaaccacttccaaacaccaaacaaaatatccatggcaactttattggtaataaacaaagacaacaccttaagggtttctatatat |
110 |
Q |
| |
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|||| ||||||||| |||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||| |
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| T |
13706684 |
cacaaacacaattggtaaccacttccaaaaaccaaacaaaatatccatggcaactttattagtaataaacaaagacaacaccttaagggttactatatat |
13706585 |
T |
|
| Q |
111 |
cttctccatgaggtcaatttcctgctttataggaatttcaggaaaaaactccattccatttgatccaaacccacttgccattccatcatcatcattgaac |
210 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
13706584 |
cttctccattaggtcaatttcctgctttataggaatttcaggaaaaaactccattccatttgatctaaacccacttgccattccatcatcatcattgaac |
13706485 |
T |
|
| Q |
211 |
atcattggcacatagccaccaatttcatcttttggagtagacaaaccttcagagaaaaaatcactctcagaacttttcataatttggctgattcccgata |
310 |
Q |
| |
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|||||||||||||||||||||||| |||||| |||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
13706484 |
atcattggcacatagccaccaattccatcttctggagtagtcaaaccttcagagaaaaaatcactctcagaac-tttcataatttggctgattcccgata |
13706386 |
T |
|
| Q |
311 |
ttcatcatgctcagagaattattcatcatctccttttcaactttcttggcagaagtgacttccattatgtatttcaaaagtagtgttgcctttgaactgt |
410 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||| |||||||||||| |
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|
| T |
13706385 |
ttcatcatgctcggagaattattcatcatctccttttcaactttcttggcagaagtaacttccattatgtatttcaaaagcagtgttccctttgaactgt |
13706286 |
T |
|
| Q |
411 |
taccttgattctttttcttgggtttttggcggcgcttagtggcgttccagtggtttttaaagtagttctccgtgcgccccgacaatctccttgcaatttc |
510 |
Q |
| |
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||||| ||||||||||||||| ||| ||||| |||||||||| ||||||||||||||| | | ||||||| |||||||||| |||||||||||||||||| |
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| T |
13706285 |
tacctcgattctttttcttggctttctggcgtcgcttagtggtgttccagtggtttttgacggagttctcggtgcgccccggcaatctccttgcaatttc |
13706186 |
T |
|
| Q |
511 |
cgcccacttgttaccaact |
529 |
Q |
| |
|
||||||||||||||||||| |
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| T |
13706185 |
cgcccacttgttaccaact |
13706167 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 181 - 529
Target Start/End: Original strand, 17173691 - 17174038
Alignment:
| Q |
181 |
ccacttgccattccatcatcatcattgaacatcattggcacatagccaccaatttcatcttttggagtagacaaaccttcagagaaaaaatcactctcag |
280 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||| ||||| ||| ||||| | | |||||||| ||||||||||| ||||||||||| | |
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| T |
17173691 |
ccacttgccattccatcatcaccattgaacatcattggaacatactcacaaattttgttctctggagtagtcaaaccttcagttctaaaatcactctttg |
17173790 |
T |
|
| Q |
281 |
aacttttcataatttggctgattcccgatattcatcatgctcagagaattattcatcatctccttttcaactttcttggcagaagtgacttccattatgt |
380 |
Q |
| |
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| |||| || |||| | ||||| |||| |||||||||| ||||| ||||| |||||||||||||| ||| ||| |||||||||||||||| |
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| T |
17173791 |
agcttt-caaaattcagttgatttttaatatccatcatgctcgtagaatacgtcatcggctccttttcaacttccttagcatcggtgacttccattatgt |
17173889 |
T |
|
| Q |
381 |
atttcaaaagtagtgttgcctttgaactgttaccttgattctttttcttgggtttttggcggcgcttagtggcgttccagtggtttttaaagtagttctc |
480 |
Q |
| |
|
|||||| ||| ||| || |||||||||| |||||| | ||||| ||||||| |||||||| ||||||||||| ||||||||||| || | | ||||||| |
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| T |
17173890 |
atttcagaagaagtattccctttgaactcttacctcggttcttcctcttgggattttggcgacgcttagtggcattccagtggttcttgatggagttctc |
17173989 |
T |
|
| Q |
481 |
cgtgcgccccgacaatctccttgcaatttccgcccacttgttaccaact |
529 |
Q |
| |
|
|||||||| | ||||||||||| |||||| | ||||||||| |||||| |
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| T |
17173990 |
agtgcgccctggcaatctccttgaaatttcagtccacttgtttccaact |
17174038 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 92 - 180
Target Start/End: Original strand, 17173578 - 17173666
Alignment:
| Q |
92 |
cttaagggtttctatatatcttctccatgaggtcaatttcctgctttataggaatttcaggaaaaaactccattccatttgatccaaac |
180 |
Q |
| |
|
||||||||||| ||| ||| |||||||||| |||||||| || || | ||||| |||||||||||||| ||||||| |||||||||| |
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|
| T |
17173578 |
cttaagggtttttattgatcatctccatgagatcaatttcttgattaagaggaacctcaggaaaaaactcaattccatatgatccaaac |
17173666 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 198 - 261
Target Start/End: Original strand, 13425404 - 13425467
Alignment:
| Q |
198 |
atcatcattgaacatcattggcacatagccaccaatttcatcttttggagtagacaaaccttca |
261 |
Q |
| |
|
||||||||||||| ||||||||||||| ||||||| |||||||| | ||||| |||||||||| |
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|
| T |
13425404 |
atcatcattgaacgtcattggcacatatccaccaagttcatcttctaaagtagtcaaaccttca |
13425467 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 443 - 529
Target Start/End: Original strand, 13467837 - 13467923
Alignment:
| Q |
443 |
cgcttagtggcgttccagtggtttttaaagtagttctccgtgcgccccgacaatctccttgcaatttccgcccacttgttaccaact |
529 |
Q |
| |
|
|||||||||| ||||||| |||| || | | ||||||| ||||| || | || ||| ||||||||||| ||||||||||| |||||| |
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|
| T |
13467837 |
cgcttagtggagttccagcggttcttgatggagttctcagtgcgtccaggcagtctacttgcaatttcagcccacttgtttccaact |
13467923 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 109; Significance: 1e-54; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 181 - 529
Target Start/End: Original strand, 34653460 - 34653807
Alignment:
| Q |
181 |
ccacttgccattccatcatcatcattgaacatcattggcacatagccaccaatttcatcttttggagtagacaaaccttcagagaaaaaatcactctcag |
280 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||| |||| ||| ||||||| || |||||| || ||||||||||||| |||||||||||| | |
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|
| T |
34653460 |
ccacttgccattccatcatcaccattgaacatcattggagcatacccatcaatttcctcatttggattaaccaaaccttcagagctaaaatcactctccg |
34653559 |
T |
|
| Q |
281 |
aacttttcataatttggctgattcccgatattcatcatgctcagagaattattcatcatctccttttcaactttcttggcagaagtgacttccattatgt |
380 |
Q |
| |
|
| |||| || | ||||| |||||||| | ||||||| |||| |||||| |||||| |||||||||| ||| ||| ||| | ||||||||||||||| |
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| T |
34653560 |
agcttt-caaagtttgggtgattcccaaatttcatcacgctcgtagaattcgtcatcagctccttttcagcttccttagcatcattgacttccattatgt |
34653658 |
T |
|
| Q |
381 |
atttcaaaagtagtgttgcctttgaactgttaccttgattctttttcttgggtttttggcggcgcttagtggcgttccagtggtttttaaagtagttctc |
480 |
Q |
| |
|
||||||| |||||| || |||||||||| |||| |||||||| |||| | || ||||||||||| ||||||||||||||||| || | ||||||| |
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|
| T |
34653659 |
atttcaagagtagttttccctttgaactattactccgattctttctcttagtattatggcggcgcttggtggcgttccagtggttcttgattgagttctc |
34653758 |
T |
|
| Q |
481 |
cgtgcgccccgacaatctccttgcaatttccgcccacttgttaccaact |
529 |
Q |
| |
|
|||||||| || |||| |||||||||| ||||||||||| |||||| |
|
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| T |
34653759 |
ggtgcgcccttgcattctctttgcaatttcagcccacttgttcccaact |
34653807 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 91 - 179
Target Start/End: Original strand, 34653346 - 34653434
Alignment:
| Q |
91 |
ccttaagggtttctatatatcttctccatgaggtcaatttcctgctttataggaatttcaggaaaaaactccattccatttgatccaaa |
179 |
Q |
| |
|
|||||||| |||||||| ||| | |||||| |||||||||||||| || |||| || ||||||||||||||||||| || |||||| |
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|
| T |
34653346 |
ccttaaggatttctatagatcatacccatgaaatcaatttcctgcttcattggaacctcgggaaaaaactccattccatatgttccaaa |
34653434 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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