View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1952_low_1 (Length: 773)
Name: NF1952_low_1
Description: NF1952
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1952_low_1 |
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| [»] chr8 (3 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 399; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 399; E-Value: 0
Query Start/End: Original strand, 176 - 773
Target Start/End: Complemental strand, 4010509 - 4009892
Alignment:
| Q |
176 |
ggatggaaggttaggacatagaaagcccggatacgatat--------gggttaaaattggattccgagttagttcgttataaccatctaatacgagaata |
267 |
Q |
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| T |
4010509 |
ggatggaaggttaggacatagaaagcccggatacgatatacgagtatgggttaaaattggattcggagttaggtcgttataactgtctaatacgagaata |
4010410 |
T |
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| Q |
268 |
ggtttaaaattggattctttttcctttgagattcggagttagttcgttgtaaccgtttaactttaagatccagagttagtttgttgtgaccgtctaactt |
367 |
Q |
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| T |
4010409 |
ggttcaaaattggattccctttcctttgagattcggagttagttcgttgtaaccgtttaactttgagatacagagttagtttgttgtgaccgtctaactt |
4010310 |
T |
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| Q |
368 |
tgagatatagagttagtttgttgtaaccgtctaactcttttccgttaaatttaacttagttagtcatttattattttannnnnnngtgttaacgatcgat |
467 |
Q |
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| T |
4010309 |
tgagatatagagttagtttgttgtaactgtctaactcttttccgttaaatttaacttagttaatcatttattattttatttttttgtgttaacgatcgat |
4010210 |
T |
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| Q |
468 |
tatttggacagagaacatagtaattaagagttcggttgatatgtaaacaaatatgataaagaatggtcttaaactatataaaatcagtcaagctcgtatt |
567 |
Q |
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| T |
4010209 |
tatttggacagagagcgtagtaattaagagttcggttgatatgtaaacaaatatgataaagaatggtcttaaactatataaaatcaattaagctcgtatt |
4010110 |
T |
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| Q |
568 |
taaaggtcatgttattgag--------------tgttttagaaatttaaaaaagcaaaagtttgtcttggaaatataggtctaatatttattaagatgat |
653 |
Q |
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| T |
4010109 |
taaaggtcatgttattgagtgttttaaggacattgttttaaaaatttaaaaaagcaaaagtttgtcttggaaatataggtctaatacttattaagatgat |
4010010 |
T |
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| Q |
654 |
aaatacaccnnnnnnnnnnnnagttgtgaggcttagttcaaactggaatgtttgaatatgctagtttaggaaaccagtcgtcaagtaaaataattgacat |
753 |
Q |
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| T |
4010009 |
aaatacac--attttttttttagttgtgaggcttagttcaaactggaatgtttgaatatgctagtttaggaaatcagtcgtcaagtaaaataattaatat |
4009912 |
T |
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| Q |
754 |
tctagatgaatatgctaatt |
773 |
Q |
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| T |
4009911 |
tctagatgaatatgctaatt |
4009892 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 146; E-Value: 2e-76
Query Start/End: Original strand, 9 - 158
Target Start/End: Complemental strand, 4010686 - 4010537
Alignment:
| Q |
9 |
gtcgaagaatatcgaagaccctaacaaccccaattttctgtgattctttgagaaataggaattgctgcggagttgaaaattggagttgcaaggaaatgga |
108 |
Q |
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| T |
4010686 |
gtcgaagaaaatcgaagaccctaacaaccccaattttctgtgattctttgagaaataggaattgctgcggagttgaaaattggagttgcaaggaaatgga |
4010587 |
T |
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| Q |
109 |
aaacgtatgaatcgaaagtgtggattttttggagtgaggttttgtttgtg |
158 |
Q |
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| T |
4010586 |
aaacgtatgaatcgaaagtgtggattttttggagtgaggttttgtttgtg |
4010537 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 706 - 773
Target Start/End: Complemental strand, 4009905 - 4009838
Alignment:
| Q |
706 |
tgaatatgctagtttaggaaaccagtcgtcaagtaaaataattgacattctagatgaatatgctaatt |
773 |
Q |
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| T |
4009905 |
tgaatatgctaatttaagaaatcaatcgtcaagtaaaataatcaacattctagatgaatatgctaatt |
4009838 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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