View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1952_low_10 (Length: 564)
Name: NF1952_low_10
Description: NF1952
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1952_low_10 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 386; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 386; E-Value: 0
Query Start/End: Original strand, 91 - 564
Target Start/End: Original strand, 1723387 - 1723865
Alignment:
| Q |
91 |
agcacgtttgcaaagaaaacaactaggaacgagggagtaaatctac---------agacactaaccagagttctaaactcatcttcggtgagatgaaaaa |
181 |
Q |
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| T |
1723387 |
agcacgtttgcaaagaaaacaactaggaacgagggagtaaatctacagacactacagacactaaccagagttctaaactcatcttcggtgagatgaaaaa |
1723486 |
T |
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| Q |
182 |
aggccaggcacactttaggatcctgtgatgtttttgtaattggtattattaattgtcaaatgcatatgagaagagaggtaattaattacaggattgcaat |
281 |
Q |
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| T |
1723487 |
aggccaggcacactttagggtcctgtgatgtttttgtaattggtattattaattgtcaaatgcatatgagaagagaggtaatttattacaggattgcaat |
1723586 |
T |
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| Q |
282 |
atactactagtatatatctctaattgtatatagattacactttaaatcattttaggaagtcaaatatattcttgctcaaattaatacgatgaaatatcct |
381 |
Q |
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| T |
1723587 |
atactactcg----tatctctaattatatatagattacactttaaatcattttaggaagtcaaatatattcttgctcaaactaatacgatgaaatatccc |
1723682 |
T |
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| Q |
382 |
ctctcctcgtttcatattttcaatccgaaactattataattattttcaatcccaagctaatataattattattgnnnnnnnntactattataaatatgat |
481 |
Q |
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| T |
1723683 |
ctctcctcgtttcatattttcaatccgaaactattataattattttcaatcccaagctaatataattattattgaaaaaaaatactattataaatatgat |
1723782 |
T |
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| Q |
482 |
tcaaataaacagcaaaaatatgcatgagatatatcttttccttactcataaagataagagaataaaatgtcaatatatttttt |
564 |
Q |
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| T |
1723783 |
tcaaataaacagcaaaaatatgcatgagatatatcttttccttactcataaagataagagaataaaatgtcaatatatttttt |
1723865 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 17 - 91
Target Start/End: Original strand, 1723166 - 1723240
Alignment:
| Q |
17 |
taggcagatgtgtcattgcattatgtttccacaacacttactgacatggaatatgaataagaagctaaaaatata |
91 |
Q |
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| T |
1723166 |
taggcagatgtgtcattgcattatttttccacaacacttactgacatggaatatgaataagaagctaaaaatata |
1723240 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 93; Significance: 5e-45; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 17 - 181
Target Start/End: Complemental strand, 10304466 - 10304299
Alignment:
| Q |
17 |
taggcagatgtgtcattgcattatgtttccacaacacttactgacatggaatatgaataagaagct-aaaaatatagcacgtttgcaaagaaaacaacta |
115 |
Q |
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| T |
10304466 |
taggcagatgtgtcattgcattgtttttccacaacacttattgacatggagtatgaataagaagctgaaaactacagcacgtttgcaaagaaaacaaata |
10304367 |
T |
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| Q |
116 |
ggaacgagggagtaaatctacagacactaa--ccagagttctaaactcatcttcggtgagatgaaaaa |
181 |
Q |
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| T |
10304366 |
ggaacaagggaataaatttatagacactaactctagagttctaaactcatcctcagtgagatgaaaaa |
10304299 |
T |
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