View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1952_low_12 (Length: 546)
Name: NF1952_low_12
Description: NF1952
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1952_low_12 |
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Alignment Details
Target: chr1 (Bit Score: 322; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 17 - 524
Target Start/End: Original strand, 37125205 - 37125693
Alignment:
| Q |
17 |
acttataaagtattagtcttgcaaataacatgttgaatatagtcattgattaccaacataaaatcatgataaacatcaaatattttcaacaaaaagcaca |
116 |
Q |
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| T |
37125205 |
acttataaaatattcgtcttgcaaataacatgttgaatataatcgttgattaccaacataaaatcatgataaacatcaaatattttcaacaaaaagcaca |
37125304 |
T |
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| Q |
117 |
tctcttctgttgacccttattagaaaagaagttaactatccaaagtaaacaaccagcaccaatctcaatataagtaccacaacttctatcaacattaaat |
216 |
Q |
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| T |
37125305 |
tctctt-----gacccttgttagaaaataagttaactatccaaagtaaacaaccagcaccaatctcaatacaagcaccacaacttctatcaacattaaat |
37125399 |
T |
|
| Q |
217 |
taacatattcggttgagcttatccacacacgcataagatttctttttgatatggataccgtgacgccccacgtttggcttgatgcctcccatttcacaac |
316 |
Q |
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| T |
37125400 |
taacatattcggttgagcttatccacacacgcacaagatttcttgttgataggggta-cgt---gccccacgtttggcttgatgtcttccatttcgcaac |
37125495 |
T |
|
| Q |
317 |
atatttgattgtgtttatccacacaagcacaacttcattcagaacgtggctttgtgctcatagacatttttgcttaacaacgctataaacataaagcaca |
416 |
Q |
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| T |
37125496 |
atattcgattgtgtttatccgcac--gcacaacttcattcagaacgtggctttgtgctcataaacatttttgcttaacaacgctataaacatgaagcaca |
37125593 |
T |
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| Q |
417 |
ggttgattgtccaattgtccagtccatttgagttttgactaagtacgatgtcttcacggcttcatataacttggtagatttgagaaaaactcaattaact |
516 |
Q |
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| T |
37125594 |
agttg--------attgtccagtccatttgcgttttgtctaagtacgatgtcttcatggcttcatataactcggtagacttgagaaaacctcaattaact |
37125685 |
T |
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Target: chr2 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 39 - 91
Target Start/End: Original strand, 36133176 - 36133228
Alignment:
| Q |
39 |
aaataacatgttgaatatagtcattgattaccaacataaaatcatgataaaca |
91 |
Q |
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| T |
36133176 |
aaataacttgttgaatatagttgttgatgaccaacatcaaatcatgataaaca |
36133228 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 38 - 121
Target Start/End: Original strand, 24183519 - 24183601
Alignment:
| Q |
38 |
caaataacatgttgaatatagtcattgattaccaacataaaatcatgataaacatcaaatattttcaacaaaaagcacatctct |
121 |
Q |
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| T |
24183519 |
caaataacctgttgaatagagttgttgattaccaacatcaaaccatgataaaccccaaata-actcagcaaaaagcacatctct |
24183601 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 32 - 121
Target Start/End: Original strand, 31653353 - 31653441
Alignment:
| Q |
32 |
gtcttgcaaataacatgttgaatatagtcattgattaccaacataaaatcatgataaacatcaaatattttcaacaaaaagcacatctct |
121 |
Q |
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| T |
31653353 |
gtctcgcaaataactcgttaaatagagttgttgattaccaacatcaaaccatggtaaacaacaaata-gttcaacaaaaagcgcatctct |
31653441 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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