View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1952_low_13 (Length: 537)
Name: NF1952_low_13
Description: NF1952
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1952_low_13 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 455; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 455; E-Value: 0
Query Start/End: Original strand, 1 - 537
Target Start/End: Original strand, 29240366 - 29240897
Alignment:
| Q |
1 |
atcaacaacacaaatcagagtatatttctacacaaaaaagagcttatttcaatgctcataaggatgaggagtggtacatatctttatattctctattctc |
100 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
29240366 |
atcaacaatacaaatcagagtatatttctacacaaaaaagagcttatttcaatgctcataaggatgaggagtgatacatatctttatattctctattctc |
29240465 |
T |
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| Q |
101 |
taacaatctgtagttttcaatctttaaatgtttactgtcaaactatgaattgccgtatttttgtaagtccacacaatctgatgttgaattttgtttctcg |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||| |||||||| |
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| T |
29240466 |
taacaatctgtagttttcaatctttaaatgtttactgtcaaactatgaattgccgtatttttggatgtccacacaatctgatgttgaattccgtttctcg |
29240565 |
T |
|
| Q |
201 |
ttttactttttatataggttgaaagataaatatcatccaacaaatttgcttacagtcattgaaaggtaattattacnnnnnnnnatttcaattttagagt |
300 |
Q |
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| T |
29240566 |
ttttgctttttatataggttgaaagataaatatcatccaacaaatttgcttacagtcattgaaaggtaattattac-tttttttatttcaattttagagt |
29240664 |
T |
|
| Q |
301 |
tctattgaaaagcataacgtattgtcctgctaatcttaatagatcatttttatttttgtgaggggttcttactagatagatagataggtggattctaatt |
400 |
Q |
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| T |
29240665 |
tctattgaaaagcataacgtattgtcctgctaatcttaatagatcatttttatttttgtgaggggttcttac----tagatagataggtggattctaatt |
29240760 |
T |
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| Q |
401 |
tttatttcttcatatcttttaggcgaatgaaagtgctcgacaactagtaaaggattttttgcttgatttgcaaagtggaacattagatctgtaagttctt |
500 |
Q |
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| T |
29240761 |
tttatttcttcatatcttttaggcgaatgaaagtgctcgacagctggtaaaggattttttgcttgatttgcaaagtggaacattagatctgtaagttctt |
29240860 |
T |
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| Q |
501 |
gtcctcgtttttacttactcttgtttgtgcgatcaat |
537 |
Q |
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| T |
29240861 |
gtcctcgtttttacttactcttgtttgtgcgatcaat |
29240897 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 1 - 530
Target Start/End: Original strand, 16827902 - 16828433
Alignment:
| Q |
1 |
atcaacaacacaaatcagagtatatttctacacaaaaaagagcttatttcaatgctcataaggatgaggagtggtacatatctttatattctctattctc |
100 |
Q |
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||||| || |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||| || | |
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| T |
16827902 |
atcaagaatacaaatcagagtatatttctacacaaaaaagagcttatttcagtgctcataaggatgaggagtggtacgtatctttatattctctgttata |
16828001 |
T |
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| Q |
101 |
taacaatctgtagttttcaatctttaaatgtttactgtcaaactatgaattgccgtatttttgtaagtccacacaatctgatgttgaattttgtttctcg |
200 |
Q |
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|||| ||||||||||||||||||||||||||| |||| ||||||||||||||| |||||||||||||||||||||||||||||||| || ||||||| |
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| T |
16828002 |
aaacagtctgtagttttcaatctttaaatgtttcctgtaaaactatgaattgccatatttttgtaagtccacacaatctgatgttgatttccctttctcg |
16828101 |
T |
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| Q |
201 |
ttttactttttatataggttgaaagataaatatcatccaacaaatttgcttacagtcattgaaaggtaattatta-----cnnnnnnnnatttcaatttt |
295 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| || |||||||| |
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| T |
16828102 |
ttttactttttatataggttgaaagataaatatcatccaacaaatttgcttacagtcattgaaaggtaattcttattattattttttttatatcaatttt |
16828201 |
T |
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| Q |
296 |
agagttctattgaaaagcataacgtattgtcctgctaatcttaatagatcatttttatttttgtgaggggttcttactagatagatagataggtggattc |
395 |
Q |
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| |||||||||||||| |||||||| |||||||| |||||||||| |||||||||||||||| || ||||| ||||| | |||| |||||||||||| |
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| T |
16828202 |
acagttctattgaaaaacataacgtgttgtcctgttaatcttaatggatcatttttatttttatggggggtgcttac----tcgataaataggtggattc |
16828297 |
T |
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| Q |
396 |
taatttttatttcttcatatcttttagg-cgaatgaaagtgctcgacaactagtaaaggattttttgcttgatttgcaaagtggaacattagatctgtaa |
494 |
Q |
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|||||||||||||||||||| ||||||| |||||||||||||||||| || | ||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
16828298 |
taatttttatttcttcatatattttaggaggaatgaaagtgctcgacagctggcaaaggattttttgcttgatttgcaaagtggaacattagatccgtaa |
16828397 |
T |
|
| Q |
495 |
gttcttgtcctcgtttttacttactcttgtttgtgc |
530 |
Q |
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|||||||||||| ||||||||||| ||||||||||| |
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| T |
16828398 |
gttcttgtcctcttttttacttacgcttgtttgtgc |
16828433 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 215 - 267
Target Start/End: Complemental strand, 846427 - 846375
Alignment:
| Q |
215 |
taggttgaaagataaatatcatccaacaaatttgcttacagtcattgaaaggt |
267 |
Q |
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| T |
846427 |
taggttgaaagataagtatcatccaacaaatttacttacagtaattgaaaggt |
846375 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 449 - 506
Target Start/End: Complemental strand, 846199 - 846142
Alignment:
| Q |
449 |
aaaggattttttgcttgatttgcaaagtggaacattagatctgtaagttcttgtcctc |
506 |
Q |
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|||||| ||||||||||||||||||||||||||| |||| |||| ||| |||||||| |
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| T |
846199 |
aaaggagtttttgcttgatttgcaaagtggaacactagacatgtatgtttttgtcctc |
846142 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 10 - 76
Target Start/End: Complemental strand, 846630 - 846564
Alignment:
| Q |
10 |
acaaatcagagtatatttctacacaaaaaagagcttatttcaatgctcataaggatgaggagtggta |
76 |
Q |
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|||| |||||||||||| |||| |||||| |||||||||||||| | || ||||||| |||||||| |
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| T |
846630 |
acaagtcagagtatattactacccaaaaacgagcttatttcaatacccacaaggatgctgagtggta |
846564 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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