View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1952_low_16 (Length: 472)
Name: NF1952_low_16
Description: NF1952
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1952_low_16 |
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Alignment Details
Target: chr1 (Bit Score: 198; Significance: 1e-108; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 27 - 260
Target Start/End: Complemental strand, 25270531 - 25270298
Alignment:
| Q |
27 |
taacactacacatacacaatccatccattacttaacaatatacctcactctcactctctctcaagcattcaacaatcgaaagtaattgataaagatatat |
126 |
Q |
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|||||||||||||||||||||||||||| | |||| |||||| |||||||||||||||||||||||||||||| ||||||| | |||||||||||||||| |
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| T |
25270531 |
taacactacacatacacaatccatccatgatttaataatataactcactctcactctctctcaagcattcaacgatcgaaaatcattgataaagatatat |
25270432 |
T |
|
| Q |
127 |
accaaccggaaaatttcaatagttaattaaccagacgtaaaagaacacgtatatcaaacaattaataaaaatgttattataactttaaaataaacatgaa |
226 |
Q |
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|||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25270431 |
accaaccggaaaatttcaatagtttattaaccagacgtgaaagaacacgtatatcaaacaattaataaaaatgttattataactttaaaataaacatgaa |
25270332 |
T |
|
| Q |
227 |
ataaaacatagaatattttgtctgtctggttgga |
260 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
25270331 |
ataaaacatagaatattttgtctgtctggttgga |
25270298 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 274 - 462
Target Start/End: Complemental strand, 25270127 - 25269936
Alignment:
| Q |
274 |
atagatagataacataccaatgatgaaaggcatagtgataagaccacccttgctcctttgtggttgagaaaccatttcatcagcatcacctgaacattga |
373 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
25270127 |
atagatagataacgtaccaatgatgaaaggcatagtgataagaccacccttgctcctttgtggttgagaaaccatttcatcagcatcacctgaatattga |
25270028 |
T |
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| Q |
374 |
acttccttgtccactttttggttggtatattcatcatcttgatcttcttc---ttgcaatggaacatatatagaattagtcatagtagaaat |
462 |
Q |
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| T |
25270027 |
gcttccttgttcattttttgattggtatattcatcatctggatcttcttcttgttgcaatggaacatatatagacatagtcatagtagaaat |
25269936 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 51; Significance: 5e-20; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 274 - 355
Target Start/End: Complemental strand, 43725967 - 43725883
Alignment:
| Q |
274 |
atagatagataacataccaatgatgaaaggcatagtgataagaccacccttgctccttt---gtggttgagaaaccatttcatca |
355 |
Q |
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|||||||||||||| |||||||||||||||||| ||||||||||||||||||| |||| || |||||||||||||||||||| |
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| T |
43725967 |
atagatagataacagaccaatgatgaaaggcatggtgataagaccacccttgcgtctttgaggttgttgagaaaccatttcatca |
43725883 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 279 - 338
Target Start/End: Complemental strand, 43712478 - 43712419
Alignment:
| Q |
279 |
tagataacataccaatgatgaaaggcatagtgataagaccacccttgctcctttgtggtt |
338 |
Q |
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||||||| ||||||||||| |||||||| |||| ||||||||||||||| |||||||||| |
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| T |
43712478 |
tagataagataccaatgataaaaggcatggtgacaagaccacccttgcttctttgtggtt |
43712419 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 278 - 351
Target Start/End: Complemental strand, 43697576 - 43697500
Alignment:
| Q |
278 |
atagataacataccaatgatgaaaggcatagtgataagaccacccttgctcctttgtg---gttgagaaaccatttc |
351 |
Q |
| |
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|||||||| |||||||| || |||||||| ||||||||||||||||||| ||||||| |||||||||||||||| |
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| T |
43697576 |
atagataagataccaattataaaaggcatggtgataagaccacccttgcgtctttgtggttgttgagaaaccatttc |
43697500 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 279 - 338
Target Start/End: Complemental strand, 43685022 - 43684963
Alignment:
| Q |
279 |
tagataacataccaatgatgaaaggcatagtgataagaccacccttgctcctttgtggtt |
338 |
Q |
| |
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||||||| ||||||||||| |||||||| |||| ||||||||||||||| |||| ||||| |
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| T |
43685022 |
tagataagataccaatgataaaaggcatggtgacaagaccacccttgcttctttctggtt |
43684963 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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