View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1952_low_17 (Length: 471)
Name: NF1952_low_17
Description: NF1952
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1952_low_17 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 419; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 419; E-Value: 0
Query Start/End: Original strand, 16 - 471
Target Start/End: Original strand, 43923744 - 43924199
Alignment:
| Q |
16 |
tgtggagctatggaatttaatttgggtggcataattgttcaatccgctgcgcaattaggtttacagccgcatttgcagatgtgtatgccccatgaaaact |
115 |
Q |
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| T |
43923744 |
tgtggagctatggaatttaatttgggtggcataattgttcaatccgctgcgcaattaggtttacagccgcatttgcagatgtgtatgccccatgaaaact |
43923843 |
T |
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| Q |
116 |
ttccttataagaaatggtttccaattcacgtgccatattcaacaaaatgtcagctaaatcagcttgtttccgtatcaaagaattgtagtaggattttgca |
215 |
Q |
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| T |
43923844 |
ttccttataagaaatggtttccaattcacgtgccatattcaacaaaatgtcagctaaatcagcttgtttccgtatcaaagaattatagtaggattttgca |
43923943 |
T |
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| Q |
216 |
gcaactctgcttatctccacatttgtttcctcaggacagtattcatcatccaaccatttatgtaaagtaaccctaagccactctgattcctaataattaa |
315 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43923944 |
gcaactctgcttatctccacatttgtttcctcaggacagtattcatcatccaaccatttatgtaaagtaaccctaagccactctgattcctaataattat |
43924043 |
T |
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| Q |
316 |
gagagnnnnnnncaattaatgaagataattatgtttagttggaatttataaatgatccgaactaccttaggatcaacgcatctctgatcaaaggtgtgtg |
415 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
43924044 |
gagagaaaaaaacaattaatgaagataattatgtttagttggaatttataaatgatccgaaccaccttaggatcaacgcatctctgatcaaaggtgtgtg |
43924143 |
T |
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| Q |
416 |
gtatggtatccgacaccgacacatggcggtttcaacacagaaaggacactaacaca |
471 |
Q |
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| T |
43924144 |
gtatggtatccgacaccgacacatggcggtttcaacaaagaaaggacactaacaca |
43924199 |
T |
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