View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1952_low_19 (Length: 451)
Name: NF1952_low_19
Description: NF1952
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1952_low_19 |
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Alignment Details
Target: chr1 (Bit Score: 341; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 51 - 437
Target Start/End: Complemental strand, 17441252 - 17440869
Alignment:
| Q |
51 |
aattaagaatgtatatacaaaactaaacctaaataaacacacacccaaaccttaaacaactattgataatgacttgttcctcccatgttgataacataag |
150 |
Q |
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| T |
17441252 |
aattaagaatgtatatacaaaactaaacctaaataaacacacacccaaaccttaaacaactattgataattacttgttcctcccatgttgataacataag |
17441153 |
T |
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| Q |
151 |
atcgattcctcggaacatccaataagtttgagcaaatcattcatagcatccatgttgtcgttgaagcaagctgtattttggatcttctcgagtttgagcc |
250 |
Q |
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| T |
17441152 |
atcgattcctcggaacatccaataagtttgtgaaaatcattcatagcctccatgttgtcgttgaagcaagctgtattttggatcttctcgagtttgagtc |
17441053 |
T |
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| Q |
251 |
gagcctcttctctctgatcttgacgactttgactcttcagttgtctccaattagacaaagtgttcttcacttgacgatcatcaaatgaaggatcaacaag |
350 |
Q |
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| T |
17441052 |
gagcctcttctctctgatcttgacgactttgactcttcagttgtctccaattagacaaagtgttcttcacttgaggatcatcaatagaaggatcaacaag |
17440953 |
T |
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| Q |
351 |
tttcttgggaggagtttgctgacatggagtttgatgatcaacagcgaccctttctttttctgacgtctctaattgcatcttctttgt |
437 |
Q |
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| T |
17440952 |
tttcttgggaggagtttgctgacatggagtttgatgatcaacagcgaccctttctttttctga---ctctaattgcatcttctttgt |
17440869 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 162 - 347
Target Start/End: Original strand, 17434784 - 17434969
Alignment:
| Q |
162 |
ggaacatccaataagtttgagcaaatcattcatagcatccatgttgtcgttgaagcaagctgtattttggatcttctcgagtttgagccgagcctcttct |
261 |
Q |
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| T |
17434784 |
ggaacatccaatgagtttgtgaaaatcatgcatagcatccatgttgtcactgaaacgagcggtgttttggataccctcgagtttgaaccgagccacttct |
17434883 |
T |
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| Q |
262 |
ctctgatcttgacgactttgactcttcagttgtctccaattagacaaagtgttcttcacttgacgatcatcaaatgaaggatcaac |
347 |
Q |
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| T |
17434884 |
ctttcatctggacgaacttgactcttcacttgtctccaattcgacaaagtcttcttcactttaggatcatcaataaaaggatcaac |
17434969 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 163 - 368
Target Start/End: Original strand, 16857633 - 16857838
Alignment:
| Q |
163 |
gaacatccaataagtttgagcaaatcattcatagcatccatgttgtcgttgaagcaagctgtattttggatcttctcgagtttgagccgagcctcttctc |
262 |
Q |
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| T |
16857633 |
gaacatccaatgagtttgtgaaaatcaaacataacatctatactctcattaaaacaagcagtattttggatcttctcgagtttgagttgagccgcttctc |
16857732 |
T |
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| Q |
263 |
tctgatcttgacgactttgactcttcagttgtctccaattagacaaagtgttcttcacttgacgatcatcaaatgaaggatcaacaagtttcttgggagg |
362 |
Q |
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| T |
16857733 |
tttgatcttgtcgaacttgacccttcatttgtctccaattagacaacgtcttcttcacttcaacatcatcaacaaaaggaccaacaagttttttgtaagg |
16857832 |
T |
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| Q |
363 |
agtttg |
368 |
Q |
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|||||| |
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| T |
16857833 |
agtttg |
16857838 |
T |
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