View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1952_low_20 (Length: 448)
Name: NF1952_low_20
Description: NF1952
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1952_low_20 |
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Alignment Details
Target: chr7 (Bit Score: 337; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 28 - 430
Target Start/End: Original strand, 16645049 - 16645450
Alignment:
| Q |
28 |
ctgagtttattgaaacaagctttaagcacattgatgagagctaacaatatgaagaaaaagagagaaaatataaaatgtgatgtttggtatttacattcac |
127 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16645049 |
ctgagtttattgaaacaagctttaagcacattgatgagagctaaaaatatgaagaaaaagagagaaaatataaaatgtgatgtttggtatttacattcac |
16645148 |
T |
|
| Q |
128 |
tttgtgaatcgaacaaaaagaataataatatagcttatggaaataaaaccctaaattaaacaatatcagataaaaggtactctaattttaaattggtgca |
227 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
16645149 |
tttgtgaatcgaacaaaaagaataataatatagcttatggaaataaaaccctaaattaaacaatatcagataaaaggtattctaattttaaattggtgca |
16645248 |
T |
|
| Q |
228 |
agggttcatgtttgaatacaaatttagagaatccaaacaagaaaattttgaggttgcttactctaattcagtaataaaacgttcatgttacaagagtagt |
327 |
Q |
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||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||| |
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| T |
16645249 |
agggttcatgtttaaatacaaatttagagaatccaaacaacaaaattttgaggttgcttactctaatt-agtaataaaacgttcatgttacaggagtagt |
16645347 |
T |
|
| Q |
328 |
atgagagaaggaagaagnnnnnnnnnncaaagaacaatgaaagaaaatcaaattaagagatagtgagatgttgagaaccttgctaaaaagttgttaagat |
427 |
Q |
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||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
16645348 |
atgagagaaggaagaagaaaaaaaaaacaaagaacgatgaaagaaaatcaaattaagagatagtgagaagttgagaaccttgctaaaaagttgttaagat |
16645447 |
T |
|
| Q |
428 |
tgc |
430 |
Q |
| |
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||| |
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| T |
16645448 |
tgc |
16645450 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 28 - 430
Target Start/End: Original strand, 17619410 - 17619811
Alignment:
| Q |
28 |
ctgagtttattgaaacaagctttaagcacattgatgagagctaacaatatgaagaaaaagagagaaaatataaaatgtgatgtttggtatttacattcac |
127 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17619410 |
ctgagtttattgaaacaagctttaagcacattgatgagagctaaaaatatgaagaaaaagagagaaaatataaaatgtgatgtttggtatttacattcac |
17619509 |
T |
|
| Q |
128 |
tttgtgaatcgaacaaaaagaataataatatagcttatggaaataaaaccctaaattaaacaatatcagataaaaggtactctaattttaaattggtgca |
227 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
17619510 |
tttgtgaatcgaacaaaaagaataataatatagcttatggaaataaaaccctaaattaaacaatatcagataaaaggtattctaattttaaattggtgca |
17619609 |
T |
|
| Q |
228 |
agggttcatgtttgaatacaaatttagagaatccaaacaagaaaattttgaggttgcttactctaattcagtaataaaacgttcatgttacaagagtagt |
327 |
Q |
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||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||| |
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| T |
17619610 |
agggttcatgtttaaatacaaatttagagaatccaaacaacaaaattttgaggttgcttactctaatt-agtaataaaacgttcatgttacaggagtagt |
17619708 |
T |
|
| Q |
328 |
atgagagaaggaagaagnnnnnnnnnncaaagaacaatgaaagaaaatcaaattaagagatagtgagatgttgagaaccttgctaaaaagttgttaagat |
427 |
Q |
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||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
17619709 |
atgagagaaggaagaagaaaaaaaaaacaaagaacgatgaaagaaaatcaaattaagagatagtgagaagttgagaaccttgctaaaaagttgttaagat |
17619808 |
T |
|
| Q |
428 |
tgc |
430 |
Q |
| |
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||| |
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|
| T |
17619809 |
tgc |
17619811 |
T |
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