View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1952_low_21 (Length: 430)
Name: NF1952_low_21
Description: NF1952
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1952_low_21 |
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Alignment Details
Target: chr3 (Bit Score: 365; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 22 - 427
Target Start/End: Complemental strand, 47505791 - 47505384
Alignment:
| Q |
22 |
tgtgtatcatctgcagactgcagcagtcacttcccttaattttctttattcgttttttataaattttatgtgtactcatatttctgaacaaatctactga |
121 |
Q |
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| T |
47505791 |
tgtgtatcatctgcagactgcagcagtcacttcccttaattttctttattcgttttttataaattttatgtgtactcatatttctgaacaaatctactga |
47505692 |
T |
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| Q |
122 |
tagttatgatccagattaatagcctgccacgaatgcaactttcaattccaggtacactatatgtacgtgaatgtat--gtttcgtttaatttgtcagtga |
219 |
Q |
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| T |
47505691 |
tagttatgatccagattaatagcctgccacgaatgcaactttcaattccaggtacactatatgtacgtgaatgtatatgtttggtttaatttgtcagtga |
47505592 |
T |
|
| Q |
220 |
gttacataaaattaccgtgactttcaattttattagttatttctttattatcgtactcctaattaatttatatatttttcttcgatcaataatatgatta |
319 |
Q |
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| T |
47505591 |
gttacataaaattaccgtgactttcaattttattagttatttctttattatcgtactcctaattaatttatatatttttcttcaatcaataatatgatta |
47505492 |
T |
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| Q |
320 |
tttgtcaattagcaattttcttgattattgtgattcggtcaatagagtcttatatttagggaggaaagagcggtaatagttagctcagaagcatttgatg |
419 |
Q |
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| T |
47505491 |
tttgtcaattagcaattttcttgattattgtggttcggtcaatagagtcttatatttagggaggaaagagcggtaatagtttgctaagaaacatttgatc |
47505392 |
T |
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| Q |
420 |
atgtccat |
427 |
Q |
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| T |
47505391 |
atgaccat |
47505384 |
T |
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