View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1952_low_26 (Length: 409)
Name: NF1952_low_26
Description: NF1952
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1952_low_26 |
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Alignment Details
Target: chr1 (Bit Score: 367; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 367; E-Value: 0
Query Start/End: Original strand, 21 - 399
Target Start/End: Original strand, 38697359 - 38697737
Alignment:
| Q |
21 |
ccactaactttgcgagtactgtctcgagctgcgaaagcaagaatgtctgcacaggacaccgttttaggacatgcagcctctatttgtgccttagcttcgt |
120 |
Q |
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|||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38697359 |
ccactaactttgcgagcactgtctcgagctgcaaaagcaagaatgtctgcacaggacaccgttttaggacatgcagcctctatttgtgccttagcttcgt |
38697458 |
T |
|
| Q |
121 |
tgattacttcaaagccacgtaaacttggattgtttgcaggatggtctctctcagatcgaatacctggtatggaatctaataaaacagaaccatcacatcc |
220 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38697459 |
tgattacttcaaagccacgtaaacttggattgtttgcaggatggtctctctcagatcgaatacctggtatggaatctaataaaacagaaccatcacatcc |
38697558 |
T |
|
| Q |
221 |
tctgacaaagcaatcatgaaaatgcattctaatcaaaccagcagcgatgccggggttgagtgaaacagctttgtttacagctcttctaacaattgcctcc |
320 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38697559 |
tctgacaaagcaatcatgaaaatgcattctaatcaaaccagcagtgatgccggggttgagtgaaacagctttgtttacagctcttctaacaattgcctcc |
38697658 |
T |
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| Q |
321 |
gcggatggacatgttgtcttgtagaaaccatacttcaaagatgttgatgatgccaatgttgttgaaactgagagaataa |
399 |
Q |
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| T |
38697659 |
gcggatggacatgttgtcttgtagaaaccatacttcaaagatgttgatgatgccaatgttgttgaaactgagagaataa |
38697737 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 21 - 399
Target Start/End: Complemental strand, 38628922 - 38628544
Alignment:
| Q |
21 |
ccactaactttgcgagtactgtctcgagctgcgaaagcaagaatgtctgcacaggacaccgttttaggacatgcagcctctatttgtgccttagcttcgt |
120 |
Q |
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|||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38628922 |
ccactaactttgcgagcactgtctcgagctgcaaaagcaagaatgtctgcacaggacaccgttttaggacatgcagcctctatttgtgccttagcttcgt |
38628823 |
T |
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| Q |
121 |
tgattacttcaaagccacgtaaacttggattgtttgcaggatggtctctctcagatcgaatacctggtatggaatctaataaaacagaaccatcacatcc |
220 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38628822 |
tgattacttcaaagccacgtaaacttggattgtttgcaggatggtctctctcagattgaatacctggtatggaatctaataaaacagaaccatcacatcc |
38628723 |
T |
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| Q |
221 |
tctgacaaagcaatcatgaaaatgcattctaatcaaaccagcagcgatgccggggttgagtgaaacagctttgtttacagctcttctaacaattgcctcc |
320 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38628722 |
tctgacaaagcaatcatgaaaatgcattctaatcaaaccagcagcgatgccggggttgagtgaaacagctttgtttacagctcttctaacaattgcctct |
38628623 |
T |
|
| Q |
321 |
gcggatggacatgttgtcttgtagaaaccatacttcaaagatgttgatgatgccaatgttgttgaaactgagagaataa |
399 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
38628622 |
acggatgaacatgttgtcttgtagaaaccatacttcaaagatgtcgatgatgccaatgttgttgaaactgagagaataa |
38628544 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 225 - 333
Target Start/End: Complemental strand, 14256401 - 14256293
Alignment:
| Q |
225 |
acaaagcaatcatgaaaatgcattctaatcaaaccagcagcgatgccggggttgagtgaaacagctttgtttacagctcttctaacaattgcctccgcgg |
324 |
Q |
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|||||||||||||||||||||||||||||||| |||||| | || || || ||||||||||||||||||| | || ||||| || |||||||| || | |
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| T |
14256401 |
acaaagcaatcatgaaaatgcattctaatcaatccagcacctataccaggattgagtgaaacagctttgtcaattgcacttctcactattgcctcagcag |
14256302 |
T |
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| Q |
325 |
atggacatg |
333 |
Q |
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||||||||| |
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| T |
14256301 |
atggacatg |
14256293 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 54; Significance: 7e-22; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 20 - 117
Target Start/End: Original strand, 30652239 - 30652335
Alignment:
| Q |
20 |
accactaactttgcgagtactgtctcgagctgcgaaagcaagaatgtctgcacaggacaccgttttaggacatgcagcctctatttgtgccttagctt |
117 |
Q |
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||||||||||||||||||||||||||||||| |||| ||||||||||||||| | || |||||||||||||| ||||||||||||| |||||||| |
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| T |
30652239 |
accactaactttgcgagtactgtctcgagctt-gaaaaaaagaatgtctgcacacaagacagttttaggacatgcggcctctatttgtgtcttagctt |
30652335 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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