View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1952_low_28 (Length: 406)
Name: NF1952_low_28
Description: NF1952
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1952_low_28 |
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| [»] chr2 (7 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 319; Significance: 1e-180; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 1 - 406
Target Start/End: Complemental strand, 15534764 - 15534360
Alignment:
| Q |
1 |
aggtcaacttgaattggtttctggagcagcttttcaaatgtgccttgagttgttatggtttgaggtataatgcaacccatttataatatgtnnnnnnnnn |
100 |
Q |
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| T |
15534764 |
aggtcaacttgaattggtttctggagcagcttttcaaatgtgccttgagttattatggtttgaggtataatgcaacccatttataatatgtaaaaaaaaa |
15534665 |
T |
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| Q |
101 |
nnnntcaagcatttacttttacatatctttatgagttaaagtgagacgtcttcatccagatttgaacccgaggtgtgtgtgagtttgagtagtttttacc |
200 |
Q |
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| T |
15534664 |
aa--tcaagcattttcttttacatatctttatgagttaaagtgagacgtcttcatccagatttgaacccgaggtgtgtgtgagtttgagtagtttttacc |
15534567 |
T |
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| Q |
201 |
actttgtctacggaccnnnnnnnng-aacgcactcctggactaatttgacaactctacagggttttactcattgtttgcatacagaattatcctacttta |
299 |
Q |
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| T |
15534566 |
actttgtctacggaccaaaaaaaaggaacgtactcctggactaatttgacaactctacagggttttactcattgtttgcatacagaattatcctacttta |
15534467 |
T |
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| Q |
300 |
cttaataaatttatctctaatttatttttatatctaacatatatacatttaactctaatttgacaactctacaaggttttattccttgtgtgcatacaca |
399 |
Q |
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| T |
15534466 |
cttaataaatttatctctaatttatttttatatctaacatatatacatttaactctaatttgacaactctacaaggttttattccttgtgtgcatacaca |
15534367 |
T |
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| Q |
400 |
attatcc |
406 |
Q |
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| T |
15534366 |
attatcc |
15534360 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 4 - 67
Target Start/End: Complemental strand, 15625545 - 15625482
Alignment:
| Q |
4 |
tcaacttgaattggtttctggagcagcttttcaaatgtgccttgagttgttatggtttgaggta |
67 |
Q |
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| T |
15625545 |
tcaacttgaattggtttctgggtcagcttttcaaatgtgccttgagttattatggtttgaggta |
15625482 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 15517949 - 15517876
Alignment:
| Q |
1 |
aggtcaacttgaattggtttctggagcagcttttcaaatgtgccttgagttgttatggtttgaggtataatgca |
74 |
Q |
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| T |
15517949 |
aggtcaacttgaattggtttctggtgcagcttttcaaatgtgtgtcgagttattatggtttgaggtatagtgca |
15517876 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 15494162 - 15494096
Alignment:
| Q |
1 |
aggtcaacttgaattggtttctggagcagcttttcaaatgtgccttgagttgttatggtttgaggta |
67 |
Q |
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| T |
15494162 |
aggtcaacttgaattggtttctggagcagcttttcaaatgtgtgtcgagttagtatggtttgaggta |
15494096 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 240 - 329
Target Start/End: Complemental strand, 15534412 - 15534328
Alignment:
| Q |
240 |
ctaatttgacaactctacagggttttactcattgtttgcatacagaattatcctactttacttaataaatttatctctaatttattttta |
329 |
Q |
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| T |
15534412 |
ctaatttgacaactctacaaggttttattccttgtgtgcatacacaattatcct-----acttaataaatttaactctaatttattttta |
15534328 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 3 - 67
Target Start/End: Complemental strand, 15655093 - 15655029
Alignment:
| Q |
3 |
gtcaacttgaattggtttctggagcagcttttcaaatgtgccttgagttgttatggtttgaggta |
67 |
Q |
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| T |
15655093 |
gtcaacttgaattggtttctggagctgcttttcaaatgtgcgtcgagttagtatggtttgaggta |
15655029 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 4 - 67
Target Start/End: Complemental strand, 15645940 - 15645877
Alignment:
| Q |
4 |
tcaacttgaattggtttctggagcagcttttcaaatgtgccttgagttgttatggtttgaggta |
67 |
Q |
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| T |
15645940 |
tcaacttgaattggtttctggagctgcttttcaaatgtgcgtcgagttactatggtttgaggta |
15645877 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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