View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1952_low_33 (Length: 393)
Name: NF1952_low_33
Description: NF1952
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1952_low_33 |
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Alignment Details
Target: chr4 (Bit Score: 251; Significance: 1e-139; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 28 - 378
Target Start/End: Complemental strand, 48714303 - 48713953
Alignment:
| Q |
28 |
ctcaaaataatcacctatagacaagaaggaaaagcactcttacagtactatctacgtcgcagacgaggagaataaccaactggcaaagaggagaaccagt |
127 |
Q |
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| T |
48714303 |
ctcaaaataatcagccatagataagaaggaaaggcaatagaacagtaccaaaaatgtcggagacgaggagaatgacgaaggtgcaaagaggagaaccagt |
48714204 |
T |
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| Q |
128 |
gagataagcatcaacaccaccaagtttagcaacatggccagcaccactgaaggagttcagaattggtgggtttgagcagcatgccggacctaacattttt |
227 |
Q |
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| T |
48714203 |
gagataagcatcaacaccaccaagtttagcaacatggccagcaccactgaaagagttcagaattggtgggtttgagcagcatgccggacctaacattttt |
48714104 |
T |
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| Q |
228 |
gtttgtttgaccttttaattttacttccctccaaaatactcaacactcgtatttctatttataactagattagatgtatgtgtaggacccactacatgtg |
327 |
Q |
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| T |
48714103 |
gtttgtttgaccttttaattttacttccctccaaaatacttaacactcacatttctatttataactagattagatgtatgtgtaggacccactacatgcg |
48714004 |
T |
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| Q |
328 |
ggtaaaatccagccaaagaaatttgcttctcacaaattgaatgctgcttgt |
378 |
Q |
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| T |
48714003 |
ggtaaaatccagccaaagaaatttgcttctaacaaattgaatgctgcttgt |
48713953 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 112 - 305
Target Start/End: Complemental strand, 48695953 - 48695754
Alignment:
| Q |
112 |
aaagaggagaaccagtgagataagcatcaacaccaccaagtttagcaacatggccagcaccactgaaggagttcagaattggtgggtttgagcagcatgc |
211 |
Q |
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| T |
48695953 |
aaagaggagagccagtgaggtaagcatcaagaccaccaattttttcaacatggccagctccactaaaggggttcagaattggtgggttagagcagcatgc |
48695854 |
T |
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| Q |
212 |
cggacctaacatttttgtttgtttgaccttt--------taattttacttccctccaaaatactcaacactcgtatttctatttataactagattagatg |
303 |
Q |
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| T |
48695853 |
atgacctgacatttttgtttctttgactttttgttttgctaactgcacttccctcc--aatactcaacactcccatttctatttataactagactagatg |
48695756 |
T |
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