View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1952_low_35 (Length: 363)
Name: NF1952_low_35
Description: NF1952
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1952_low_35 |
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Alignment Details
Target: chr4 (Bit Score: 295; Significance: 1e-166; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 295; E-Value: 1e-166
Query Start/End: Original strand, 18 - 353
Target Start/End: Original strand, 47969173 - 47969508
Alignment:
| Q |
18 |
atggcagtaaccgcacttcnnnnnnncaaccttaataaactcttcctcaaaaatcatcatcaaaatgaccataatcactctcaaaccacataacagtaaa |
117 |
Q |
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| T |
47969173 |
atggcagtaaccacacttcaaaaaaacaaccttaataaactcttcctcaaaaatcatcatcaaaatgaccataatcactctcaaaccacataatagtaaa |
47969272 |
T |
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| Q |
118 |
tcatcatgtttctttactcaacctcaaactcagaatcaaagaataaattcacacaacccttttatcaaaaccacttttcaacgttttcacttccacttca |
217 |
Q |
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| T |
47969273 |
tcatcatgtttctttactcaacctcaaactcagaatcaaataacaaattcacacaacccttttatcaaaaccacttttcaacgttttcacttccacttca |
47969372 |
T |
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| Q |
218 |
caccttccaaactcatccacagaaccaaacaaagaacagtagtttcatgtagtaatactcaacaagatatcaaagaaacccataataaactgtccaagac |
317 |
Q |
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| T |
47969373 |
caccttccaaactcatccacagaaccaaacaaagaacagtagtttcatgtagtaatactcaacaagatatcaaagaaacccataataaactgtccaagac |
47969472 |
T |
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| Q |
318 |
caaaatcaatgctctctccgacctcgatgatgatgt |
353 |
Q |
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| T |
47969473 |
caaaatcaatgctctctccgacctcgacgatgatgt |
47969508 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 166 - 230
Target Start/End: Complemental strand, 8375736 - 8375672
Alignment:
| Q |
166 |
tcacacaacccttttatcaaaaccacttttcaacgttttcacttccacttcacaccttccaaact |
230 |
Q |
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| T |
8375736 |
tcacacattccttctatcaaaacttgttttcaacactttcacttccacttcacaccttccaaact |
8375672 |
T |
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