View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1952_low_37 (Length: 346)
Name: NF1952_low_37
Description: NF1952
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1952_low_37 |
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| [»] scaffold0117 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 316; Significance: 1e-178; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 17 - 340
Target Start/End: Original strand, 887989 - 888312
Alignment:
| Q |
17 |
agattcaagttattaatcaaattactaaataaagaaaagtgactaacttcactaaatcttggaaatgaatcatcaaaaggaatcaagattcaaaatgaga |
116 |
Q |
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| T |
887989 |
agattcaagttataaatcaaattactaaataaagaaaagtgactaacttcactaaatcttggaaatgaatcatcaaaaggaatcaagattcaaaatgaga |
888088 |
T |
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| Q |
117 |
ctcgtatccaaaataacataaccatttgatttacaatgtgtgcatcgattttggatatcgaatcaagatatgacacgcatatattgtgagaagatactcc |
216 |
Q |
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| T |
888089 |
ctcgtatccaaaataacataaccatttgatttacaatgtgtgcatcgattttggatatcgaatcaagatatgacacgcatatattgtgagaagatactcc |
888188 |
T |
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| Q |
217 |
aaatttatgttacgactatcttaactaattttctctgtgcattctgcttatagttatagctaataagctctaatttctgttgatttttctttctaacagc |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
888189 |
aaatttatgttacgactatcttaactaattttctctgtgcattctgcttatagttatagctaataagctctaatttctgttgatttttctttctaacagc |
888288 |
T |
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| Q |
317 |
aaattcaaaacaatcctatgctac |
340 |
Q |
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| T |
888289 |
aaattcaaaacaatcccatgctac |
888312 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 46 - 205
Target Start/End: Complemental strand, 1003069 - 1002916
Alignment:
| Q |
46 |
taaagaaaagtgactaacttcactaaatcttggaaatgaatcatcaaaaggaatcaagattcaaaatgagactcgtatccaaaataacataaccatttga |
145 |
Q |
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| T |
1003069 |
taaagaaaagcgactaactacactaaatttaggaaatgattcattaaaaggaatcaagattcaaaatgatattcatatc----ataacaaaaccatttca |
1002974 |
T |
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| Q |
146 |
tttacaatgtgtgcatcgattttggatatcgaatcaagatatgacacgcatatattgtga |
205 |
Q |
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| T |
1002973 |
tttaaaatgtgt--atcgattttgaatatcgaatcaagttacgactcacatatatcgtga |
1002916 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0117 (Bit Score: 77; Significance: 1e-35; HSPs: 1)
Name: scaffold0117
Description:
Target: scaffold0117; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 223 - 340
Target Start/End: Complemental strand, 16616 - 16497
Alignment:
| Q |
223 |
atgttacgactatcttaactaattttctct--gtgcattctgcttatagttatagctaataagctctaatttctgttgatttttctttctaacagcaaat |
320 |
Q |
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|||||| ||||||||||| ||| ||||||| ||||||||||||||||||||||||||||||| ||| ||| ||||||||||||||||||||||||||| |
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| T |
16616 |
atgttatgactatcttaagtaactttctctatgtgcattctgcttatagttatagctaataagttctgttttgtgttgatttttctttctaacagcaaat |
16517 |
T |
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| Q |
321 |
tcaaaacaatcctatgctac |
340 |
Q |
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| T |
16516 |
tccaaacaatcctatgctac |
16497 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 57; Significance: 9e-24; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 232 - 340
Target Start/End: Complemental strand, 48301392 - 48301284
Alignment:
| Q |
232 |
ctatcttaactaattttctctgtgcattctgcttatagttatagctaataagctctaatttctgttgatttttctttctaacagcaaattcaaaacaatc |
331 |
Q |
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|||||||||||||||||||||| ||| |||||||||||| |||||||||| |||||| ||| | || ||||||||||||| || |||| || | |||||| |
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| T |
48301392 |
ctatcttaactaattttctctgcgcagtctgcttatagtcatagctaatatgctctattttatttttatttttctttctagcaacaaactccatacaatc |
48301293 |
T |
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| Q |
332 |
ctatgctac |
340 |
Q |
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| T |
48301292 |
ctatgctac |
48301284 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 259 - 340
Target Start/End: Complemental strand, 38192449 - 38192368
Alignment:
| Q |
259 |
tctgcttatagttatagctaataagctctaatttctgttgatttttctttctaacagcaaattcaaaacaatcctatgctac |
340 |
Q |
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| T |
38192449 |
tctgattatagttatagctgatagactctattttatgctgatttttctttctaacagaaaattccaaataatcctatgctac |
38192368 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 296 - 340
Target Start/End: Complemental strand, 20019998 - 20019954
Alignment:
| Q |
296 |
ttgatttttctttctaacagcaaattcaaaacaatcctatgctac |
340 |
Q |
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| T |
20019998 |
ttgatttttctctctaacagcaaactccaaacaaccctatgctac |
20019954 |
T |
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