View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1952_low_4 (Length: 621)
Name: NF1952_low_4
Description: NF1952
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1952_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 351; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 206 - 603
Target Start/End: Complemental strand, 39444859 - 39444453
Alignment:
| Q |
206 |
tgtatttttatgcttgtatataaaggaatttattttggtatattgcacatcaaccacttgttccagacccttgtgtaagggcaaaaacatatctattata |
305 |
Q |
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| T |
39444859 |
tgtatttttatgcttgtatataaaggaatttattttggtatattgcacatcaaccacttgttctagacccttgtgtaagggcaaaaacatatctattata |
39444760 |
T |
|
| Q |
306 |
aatgattccacatttattaacgttacatcgcatcacattcacagggcaagcatgtctattatcaaagattttacaacatttataaagttctgtcacatca |
405 |
Q |
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| T |
39444759 |
aatgattccacatttattaaggttacatcgcatcacattcacagggcaagcatgtctattatcaaagattttacaacatttataaagttctgtcacatca |
39444660 |
T |
|
| Q |
406 |
caccagacagcttatttttactgcaacaacgccagactaaatcttaagtaaaataatctacggaaattagcatggggagaatctaacatgaggacagcac |
505 |
Q |
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| T |
39444659 |
caccagacagcttatttttactgcaacaacgccagactaaatcttaagtaaaataatctacgaaaattagcatggggagaatctaacatgaggacagcac |
39444560 |
T |
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| Q |
506 |
actttaaggtctcaaatcaaaacacgagaacaacacaagtaggttaccaccagaaatgttaaggttgatgggca---------ggtagcagtagtgttgg |
596 |
Q |
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| T |
39444559 |
actttaaggtctcaaatcaaaacacgagaccaacacaagtaggttgccactagaaatgttaaggttgatgggcaatattaggtggtagcagtagtgttgg |
39444460 |
T |
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| Q |
597 |
aattaat |
603 |
Q |
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| T |
39444459 |
aattaat |
39444453 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 12 - 205
Target Start/End: Complemental strand, 39445224 - 39445031
Alignment:
| Q |
12 |
tattctatatagatatgatcaacgttacgcagctgtttagatcactatttaacatgatatgtgtccattccaagacttgttacatgttatggccaaatga |
111 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39445224 |
tattctatatagatatgatcaacgttacgcagctgtttagatcactatttaacatgatatgtgtccattccaagacttgttacatgttatggccaaatga |
39445125 |
T |
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| Q |
112 |
gaagattagtacatggagtgaggaaattttaggatctaaaccttggttcctctcatgacaaatggatcaacaacatatgccgaggaacaaagct |
205 |
Q |
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| T |
39445124 |
gaagattagtacatggagtgaggaaattttaggatctaaaccttggttcctctcatgacaaatggatcaacaacatatgcagaggaacaaagct |
39445031 |
T |
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