View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1952_low_40 (Length: 334)
Name: NF1952_low_40
Description: NF1952
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1952_low_40 |
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Alignment Details
Target: chr1 (Bit Score: 209; Significance: 1e-114; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 43 - 259
Target Start/End: Original strand, 5681577 - 5681793
Alignment:
| Q |
43 |
ataacacctattgctgctgcacgtgcttatgatactgctgtgttttatcttagaggtccttctgcaaaccttaattttcctgaattgttgttcaaagatc |
142 |
Q |
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| T |
5681577 |
ataacacctattgctgctgcacgtgcttatgatactgctgtgttttatcttagaggtccttctgcaaaccttaattttcctgaattgttgttcaaagatc |
5681676 |
T |
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| Q |
143 |
aacaagaagatgaagaaaatctacaacaacatgggaatatgtcggctgattcaataaggaaaaaagctacacaagttggtgctagagttgatgctcttga |
242 |
Q |
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| T |
5681677 |
aacaagaagatgaagaaaatctacaacaacatgggaatatgtcggctgattcaataaggaaaaaagctgcacaagttggtgctagagttgatgctattga |
5681776 |
T |
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| Q |
243 |
aactaattctctaatta |
259 |
Q |
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| T |
5681777 |
aactaattctctaatta |
5681793 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 283 - 325
Target Start/End: Original strand, 5681814 - 5681856
Alignment:
| Q |
283 |
gtttcttccaataatcatgttcactccaattctacttcttctc |
325 |
Q |
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| T |
5681814 |
gtttcttccaataatcatgttcactccaattctacttcttctc |
5681856 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 181 - 240
Target Start/End: Complemental strand, 47038292 - 47038233
Alignment:
| Q |
181 |
atgtcggctgattcaataaggaaaaaagctacacaagttggtgctagagttgatgctctt |
240 |
Q |
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| T |
47038292 |
atgtctgctgatttaatacgcaaaaaagctaccaaagtcggtgctagagttgatgctctt |
47038233 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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