View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1952_low_41 (Length: 330)
Name: NF1952_low_41
Description: NF1952
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1952_low_41 |
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Alignment Details
Target: chr5 (Bit Score: 206; Significance: 1e-112; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 20 - 310
Target Start/End: Original strand, 1724111 - 1724401
Alignment:
| Q |
20 |
caaaataacccttcctataagcttctcttttattcaaataaaaaatctagaacccttgttctccaacataagttatagtttgctatcattaatctttgcc |
119 |
Q |
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| T |
1724111 |
caaaataacccttcttataagcttctcttttattcaaataaaaaatctagaacccttgttctccaacataagttatagtttgctatcattaatctttgcc |
1724210 |
T |
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| Q |
120 |
actgcacnnnnnnnnnnggttatgaacatgaagaagatcgaacaagatccatcctcaaactcgaattccaacaagcctattgattatgtgaagctatcaa |
219 |
Q |
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| T |
1724211 |
actgcacaaaaaaaaaag-ttatgaacatgaagaagatcgaacaagatccatcctcaaactcgaattccaacaagcctagtgattatgtgaagctatcaa |
1724309 |
T |
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| Q |
220 |
aagatgattcgattcacggatcaaaggtgccaaagcac-gnnnnnnnnagcaatatacaagtgggttcagcatcttgtttttctaagaacaa |
310 |
Q |
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|||||||||||||| |||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1724310 |
aagatgattcgatttgcggatcaaaggtgccaaagcacggttttttttagcaatatacaagtgggttcagcatcttgtttttctaagaacaa |
1724401 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 142 - 248
Target Start/End: Original strand, 1744162 - 1744268
Alignment:
| Q |
142 |
tgaacatgaagaagatcgaacaagatccatcctcaaactcgaattccaacaagcctattgattatgtgaagctatcaaaagatgattcgattcacggatc |
241 |
Q |
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|||||||||| || ||||||||||||||||||||||||| ||| ||||||||||||||||| ||||| || || |||||||||| ||||||| |||| |
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| T |
1744162 |
tgaacatgaaagagctcgaacaagatccatcctcaaactcaaatctcaacaagcctattgatttcgtgaaactgtctaaagatgatttgattcacagatc |
1744261 |
T |
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| Q |
242 |
aaaggtg |
248 |
Q |
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|||||| |
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| T |
1744262 |
caaggtg |
1744268 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 157 - 236
Target Start/End: Original strand, 1738834 - 1738913
Alignment:
| Q |
157 |
tcgaacaagatccatcctcaaactcgaattccaacaagcctattgattatgtgaagctatcaaaagatgattcgattcac |
236 |
Q |
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||||||| |||||||| |||||||| |||| |||||||||| |||||| |||||| ||||| ||||| |||||||||||| |
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| T |
1738834 |
tcgaacatgatccatcttcaaactctaatttcaacaagcctcttgattttgtgaaactatctaaagaggattcgattcac |
1738913 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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