View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1952_low_42 (Length: 330)

Name: NF1952_low_42
Description: NF1952
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1952_low_42
NF1952_low_42
[»] chr8 (3 HSPs)
chr8 (11-261)||(12931928-12932178)
chr8 (259-308)||(12930630-12930681)
chr8 (259-308)||(12935376-12935427)
[»] chr4 (8 HSPs)
chr4 (11-261)||(14175198-14175448)
chr4 (11-261)||(28610430-28610680)
chr4 (259-307)||(14178646-14178696)
chr4 (259-306)||(28607166-28607215)
chr4 (259-306)||(28611928-28611977)
chr4 (259-308)||(11104426-11104474)
chr4 (259-307)||(14173892-14173942)
chr4 (254-306)||(44161543-44161596)
[»] chr3 (1 HSPs)
chr3 (13-261)||(24874309-24874560)
[»] chr5 (1 HSPs)
chr5 (77-261)||(38996099-38996284)
[»] chr7 (3 HSPs)
chr7 (259-308)||(37040786-37040837)
chr7 (258-304)||(15290195-15290244)
chr7 (259-306)||(15302900-15302949)
[»] chr1 (1 HSPs)
chr1 (259-308)||(34907093-34907144)
[»] chr2 (1 HSPs)
chr2 (259-306)||(8539139-8539188)


Alignment Details
Target: chr8 (Bit Score: 231; Significance: 1e-127; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 11 - 261
Target Start/End: Complemental strand, 12932178 - 12931928
Alignment:
Q  11 cagagattagatttagacgcaaatctggcacatgtctcacgtccttcagtgttagtgtaaaaccggtattggtttgaacacacacatcaccaattccaac 110  Q
    |||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12932178 cagagattagatttagacgcaaatctggcacatgtcgcacgttcttcagtgttagtgtaaaaccggtattggtttgaacacacacatcaccaattccaac 12932079  T
Q  111 aatatctgcaatgctattattgcccatctttactttgccaaagtctcctactttatacatcgtaaagaattctttgttggaagtagcatgataagaagct 210  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||| ||||||||||||    
T  12932078 aatatctgcaatgctattattgcccatctttactttgccaaagtctcctactttgtacatcgtaaagaattctttattggaagtagcgtgataagaagct 12931979  T
Q  211 gctgagtcaatgacccattcaacacatgaatctgcaacatgacattcttct 261  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12931978 gctgagtcaatgacccattcaacacatgaatctgcaacatgacattcttct 12931928  T

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Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 259 - 308
Target Start/End: Complemental strand, 12930681 - 12930630
Alignment:
Q  259 tctcacacacttctacacaca--gaagctttgtattctcacttctgcttcaa 308  Q
    |||||||||||||||||||||  ||||||||||||| |||||||||||||||    
T  12930681 tctcacacacttctacacacacagaagctttgtattttcacttctgcttcaa 12930630  T

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Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 259 - 308
Target Start/End: Complemental strand, 12935427 - 12935376
Alignment:
Q  259 tctcacacacttctacacaca--gaagctttgtattctcacttctgcttcaa 308  Q
    |||||||||||||||||||||  ||||||||||||| |||||||||||||||    
T  12935427 tctcacacacttctacacacacagaagctttgtattttcacttctgcttcaa 12935376  T

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Target: chr4 (Bit Score: 231; Significance: 1e-127; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 11 - 261
Target Start/End: Complemental strand, 14175448 - 14175198
Alignment:
Q  11 cagagattagatttagacgcaaatctggcacatgtctcacgtccttcagtgttagtgtaaaaccggtattggtttgaacacacacatcaccaattccaac 110  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14175448 cagagattagatttagacgcaaatctggcacatgtcgcacgtccttcagtgttagtgtaaaaccggtattggtttgaacacacacatcaccaattccaac 14175349  T
Q  111 aatatctgcaatgctattattgcccatctttactttgccaaagtctcctactttatacatcgtaaagaattctttgttggaagtagcatgataagaagct 210  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||| ||||||||||| ||||||||||||    
T  14175348 aatatctgcaatgctattattgcccatctttactttgccaaagtctcctactttgtacattgtaaagaattctttattggaagtagcgtgataagaagct 14175249  T
Q  211 gctgagtcaatgacccattcaacacatgaatctgcaacatgacattcttct 261  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14175248 gctgagtcaatgacccattcaacacatgaatctgcaacatgacattcttct 14175198  T

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Target: chr4; HSP #2
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 11 - 261
Target Start/End: Original strand, 28610430 - 28610680
Alignment:
Q  11 cagagattagatttagacgcaaatctggcacatgtctcacgtccttcagtgttagtgtaaaaccggtattggtttgaacacacacatcaccaattccaac 110  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  28610430 cagagattagatttagacgcaaatctggcacatgtcgcacgtccttcagtgttagtgtaaaatcggtattggtttgaacacacacatcaccaattccaac 28610529  T
Q  111 aatatctgcaatgctattattgcccatctttactttgccaaagtctcctactttatacatcgtaaagaattctttgttggaagtagcatgataagaagct 210  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||| ||||||||||||    
T  28610530 aatatctgcaatgctattattgcccatctttactttgccaaagtctcctactttgtacatcgtaaagaattctttattggaagtagcgtgataagaagct 28610629  T
Q  211 gctgagtcaatgacccattcaacacatgaatctgcaacatgacattcttct 261  Q
    ||||||||||||||||||| ||||||||||||||||| |||||||||||||    
T  28610630 gctgagtcaatgacccattaaacacatgaatctgcaagatgacattcttct 28610680  T

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Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 259 - 307
Target Start/End: Complemental strand, 14178696 - 14178646
Alignment:
Q  259 tctcacacacttctacacaca--gaagctttgtattctcacttctgcttca 307  Q
    |||||||||||||||||||||  ||||||||||||| ||||||||||||||    
T  14178696 tctcacacacttctacacacacagaagctttgtattttcacttctgcttca 14178646  T

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Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 259 - 306
Target Start/End: Original strand, 28607166 - 28607215
Alignment:
Q  259 tctcacacacttctacac--acagaagctttgtattctcacttctgcttc 306  Q
    ||||||||||||||||||  |||||||||||||||| |||||||||||||    
T  28607166 tctcacacacttctacacacacagaagctttgtattttcacttctgcttc 28607215  T

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Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 259 - 306
Target Start/End: Original strand, 28611928 - 28611977
Alignment:
Q  259 tctcacacacttctacac--acagaagctttgtattctcacttctgcttc 306  Q
    ||||||||||||||||||  |||||||||||||||| |||||||||||||    
T  28611928 tctcacacacttctacacacacagaagctttgtattttcacttctgcttc 28611977  T

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Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 259 - 308
Target Start/End: Complemental strand, 11104474 - 11104426
Alignment:
Q  259 tctcacacacttctacacacagaagctttgtattctcacttctgcttcaa 308  Q
    ||||||||||||||||||| |||||||||||||| | |||||||||||||    
T  11104474 tctcacacacttctacacatagaagctttgtatt-tgacttctgcttcaa 11104426  T

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Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 259 - 307
Target Start/End: Complemental strand, 14173942 - 14173892
Alignment:
Q  259 tctcacacacttctacacaca--gaagctttgtattctcacttctgcttca 307  Q
    |||||||||||||||||||||  ||| ||||||||| ||||||||||||||    
T  14173942 tctcacacacttctacacacacagaaactttgtattttcacttctgcttca 14173892  T

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Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 254 - 306
Target Start/End: Complemental strand, 44161596 - 44161543
Alignment:
Q  254 attcttctcacacacttctacacacagaagctttgt-attctcacttctgcttc 306  Q
    |||| |||||||||| ||||||||||||||||||||  || |||||||||||||    
T  44161596 attcctctcacacacctctacacacagaagctttgtgtttttcacttctgcttc 44161543  T

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Target: chr3 (Bit Score: 126; Significance: 6e-65; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 126; E-Value: 6e-65
Query Start/End: Original strand, 13 - 261
Target Start/End: Original strand, 24874309 - 24874560
Alignment:
Q  13 gagattagatttagacgcaaatctggcacatgtctcacgtccttcagtgttagtgtaaaaccggtattggtttgaacacacacatcaccaattccaacaa 112  Q
    ||||||| |||||||||||||||| ||||||||| ||||||||| |||||| |||| |||||| |||||||||||||||||||||||  |||||||||||    
T  24874309 gagattatatttagacgcaaatctagcacatgtcgcacgtcctttagtgttggtgttaaaccgatattggtttgaacacacacatcattaattccaacaa 24874408  T
Q  113 tatctgcaatgctattattgcccatctttactttgc---caaagtctcctactttatacatcgtaaagaattctttgttggaagtagcatgataagaagc 209  Q
    ||||| ||||  |||| ||| | ||||| |||||||   |||||||||||||||| ||||||  ||||||||||||||||||||| |||||||||||||     
T  24874409 tatctacaatattattgttgtctatcttgactttgccaacaaagtctcctactttgtacatcacaaagaattctttgttggaagtggcatgataagaaga 24874508  T
Q  210 tgctgagtcaatgacccattcaacacatgaatctgcaacatgacattcttct 261  Q
    ||| ||||||| |||||||  ||||||||||||| ||| | |||||||||||    
T  24874509 tgcagagtcaacgacccatataacacatgaatctacaatacgacattcttct 24874560  T

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Target: chr5 (Bit Score: 98; Significance: 3e-48; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 77 - 261
Target Start/End: Original strand, 38996099 - 38996284
Alignment:
Q  77 tattggtttgaacacacacatcaccaattccaacaatatctgcaatgctattattgcccatctttactttgccaaagtctcctactttatacatcgtaaa 176  Q
    ||||||||| ||||||||||||||||||||||||||||| || ||||||| |||| ||||| ||||||||| ||||||||||| |||| |||||||||||    
T  38996099 tattggtttaaacacacacatcaccaattccaacaatatttgtaatgctactatttcccatatttactttgtcaaagtctcctgctttgtacatcgtaaa 38996198  T
Q  177 gaattc-tttgttggaagtagcatgataagaagctgctgagtcaatgacccattcaacacatgaatctgcaacatgacattcttct 261  Q
    |||||| ||||||||||||  |||||| ||||| || ||||||||| | |||||||||| ||||| |||||| ||| |||||||||    
T  38996199 gaattcttttgttggaagtgacatgattagaagatgttgagtcaattatccattcaacaaatgaaactgcaatatggcattcttct 38996284  T

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Target: chr7 (Bit Score: 37; Significance: 0.000000000008; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 259 - 308
Target Start/End: Original strand, 37040786 - 37040837
Alignment:
Q  259 tctcacacacttctacac--acagaagctttgtattctcacttctgcttcaa 308  Q
    ||||||||||||||||||  |||||||||||||||| |||||||||||||||    
T  37040786 tctcacacacttctacacacacagaagctttgtattttcacttctgcttcaa 37040837  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 258 - 304
Target Start/End: Complemental strand, 15290244 - 15290195
Alignment:
Q  258 ttctcacacacttctacacacagaagc---tttgtattctcacttctgct 304  Q
    |||||||||||||||||||||||||||   |||||||| |||||||||||    
T  15290244 ttctcacacacttctacacacagaagcttttttgtattttcacttctgct 15290195  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 259 - 306
Target Start/End: Complemental strand, 15302949 - 15302900
Alignment:
Q  259 tctcacacacttctacacaca--gaagctttgtattctcacttctgcttc 306  Q
    |||||||||||||||||||||  ||||||||||||| ||| |||||||||    
T  15302949 tctcacacacttctacacacacagaagctttgtattttcaattctgcttc 15302900  T

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Target: chr1 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 259 - 308
Target Start/End: Complemental strand, 34907144 - 34907093
Alignment:
Q  259 tctcacacacttctacacaca--gaagctttgtattctcacttctgcttcaa 308  Q
    |||||||||||||||||||||  ||||||||||||| |||||||||||||||    
T  34907144 tctcacacacttctacacacacagaagctttgtattttcacttctgcttcaa 34907093  T

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Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 259 - 306
Target Start/End: Complemental strand, 8539188 - 8539139
Alignment:
Q  259 tctcacacacttctacacaca--gaagctttgtattctcacttctgcttc 306  Q
    |||||||||||||||||||||  ||||||||||||| |||||||||||||    
T  8539188 tctcacacacttctacacacacagaagctttgtattttcacttctgcttc 8539139  T

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