View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1952_low_45 (Length: 326)
Name: NF1952_low_45
Description: NF1952
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1952_low_45 |
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Alignment Details
Target: chr2 (Bit Score: 188; Significance: 1e-102; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 1 - 318
Target Start/End: Complemental strand, 5049887 - 5049581
Alignment:
| Q |
1 |
ttttagtaaattaaaaataaaatattattatttatctagtttnnnnnnnntgtaatttttggaaagtaaatcataattatactagtagnnnnnnnagagg |
100 |
Q |
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| T |
5049887 |
ttttagtaaattaaaaataaaatattattatttatctagtttaaaaaaaatgtaatttttggaaagtaaatgataattatactagtagtttttttagagg |
5049788 |
T |
|
| Q |
101 |
atataaagttagtaataagaatatttttcactaccnnnnnnnnnnnngtaataagaatattttttgcaaaattcttagtcttcttagtcttttgtactag |
200 |
Q |
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| T |
5049787 |
atataaagttagtaataagaatatttttcactaccaaaaaaaaaa--gtaataagaatattttttgcaaaattcttagtctt---------ttgtactag |
5049699 |
T |
|
| Q |
201 |
gttgctgttctaacaattgaaaaccttgttttgtaattgactacacacactcttgtttggcgggatgttgttgttgttcaatatatctaatttgatgatt |
300 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
5049698 |
gttgctgttctaacaattgaaaaccttgttttgtcattgactacacacactcttgtttggtgggatgttgttgttgttcaatatatctaatttgatgatt |
5049599 |
T |
|
| Q |
301 |
cttgtttcataagacaag |
318 |
Q |
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|||||||||||||||||| |
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| T |
5049598 |
cttgtttcataagacaag |
5049581 |
T |
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