View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1952_low_47 (Length: 313)
Name: NF1952_low_47
Description: NF1952
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1952_low_47 |
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Alignment Details
Target: chr5 (Bit Score: 183; Significance: 5e-99; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 183; E-Value: 5e-99
Query Start/End: Original strand, 101 - 311
Target Start/End: Complemental strand, 3821221 - 3821011
Alignment:
| Q |
101 |
taatggagaagttgacgttaaacttaccctattcttaattctcctcgagtccatcccatgaacaatgtcagccaacatatctccattgcaatagcaaaac |
200 |
Q |
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| T |
3821221 |
taatggagaagttgacgttaaacttaccctatttttaattctcctggagtccatcccatgaacaatgtcagccaacatatctccattgcaatagcaaaac |
3821122 |
T |
|
| Q |
201 |
tcactgccaaaacaaaattctggaaacgaatttgattgtgaaagaaaaatgaatgcacacaaccattaaatacagcatcagcaccacacagaacaatatc |
300 |
Q |
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| T |
3821121 |
tcactgccaaaacaaagttctggaaacgaatttgattgggaaagaaaaatgaatgcacataaccattaaatacagcatcagcaccgcacagaacaatatc |
3821022 |
T |
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| Q |
301 |
acgacaatcag |
311 |
Q |
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|| |||||||| |
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| T |
3821021 |
accacaatcag |
3821011 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 11 - 92
Target Start/End: Complemental strand, 3821348 - 3821267
Alignment:
| Q |
11 |
catagggaagatagaaatttaccaagaattgatgtggtagatgcttcaagcgaataaaagaatagcaagaacaaaccagcaa |
92 |
Q |
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| T |
3821348 |
catagggaagatagaaatttaccaagaattgatgtggtagatgcttcaagcgaataaaagaatagcaagaacaaaccagcaa |
3821267 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 60; Significance: 1e-25; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 200 - 307
Target Start/End: Original strand, 55860849 - 55860955
Alignment:
| Q |
200 |
ctcactgccaaaacaaaattctggaaacgaatttgattgtgaaagaaaaatgaatgcacacaaccattaaatacagcatcagcaccacacagaacaatat |
299 |
Q |
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| T |
55860849 |
ctcactgccaaacaaaaattctg-aaacaaatttgattgtgaaggaaaactgaatgcaaacaaccattatatacatcatcagcgccacacagaacactat |
55860947 |
T |
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| Q |
300 |
cacgacaa |
307 |
Q |
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|||||||| |
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| T |
55860948 |
cacgacaa |
55860955 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 12 - 92
Target Start/End: Original strand, 55860654 - 55860735
Alignment:
| Q |
12 |
atagggaagatagaaatttaccaagaattgatgtggtagatgcttcaagcgaataaaagaatagcaag-aacaaaccagcaa |
92 |
Q |
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|||||||||||||||||||||| |||||||||||||| ||||||| | |||||||||||| |||||| ||||||||||||| |
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| T |
55860654 |
atagggaagatagaaatttaccgagaattgatgtggtcaatgcttccatcgaataaaagaacagcaagaaacaaaccagcaa |
55860735 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 103 - 140
Target Start/End: Original strand, 55860789 - 55860826
Alignment:
| Q |
103 |
atggagaagttgacgttaaacttaccctattcttaatt |
140 |
Q |
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| T |
55860789 |
atggagaagttgacgttaaactcaccctatccttaatt |
55860826 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 57; Significance: 8e-24; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 223 - 307
Target Start/End: Complemental strand, 29273695 - 29273611
Alignment:
| Q |
223 |
gaaacgaatttgattgtgaaagaaaaatgaatgcacacaaccattaaatacagcatcagcaccacacagaacaatatcacgacaa |
307 |
Q |
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||||| |||||||||||||| ||||| ||||||||||||||||||| ||||| ||||||| |||||||||||| ||||||||||| |
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| T |
29273695 |
gaaacaaatttgattgtgaaggaaaactgaatgcacacaaccattatatacatcatcagcgccacacagaacactatcacgacaa |
29273611 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 12 - 92
Target Start/End: Complemental strand, 29273911 - 29273830
Alignment:
| Q |
12 |
atagggaagatagaaatttaccaagaattgatgtggtagatgcttcaagcgaataaaagaatagcaag-aacaaaccagcaa |
92 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||| | |||||||||||| |||||| ||||||||||||| |
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| T |
29273911 |
atagggaagatagaaatttaccaagaattgatgtggtcaatgcttccatcgaataaaagaacagcaagaaacaaaccagcaa |
29273830 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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