View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1952_low_49 (Length: 294)
Name: NF1952_low_49
Description: NF1952
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1952_low_49 |
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Alignment Details
Target: chr8 (Bit Score: 207; Significance: 1e-113; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 19 - 282
Target Start/End: Original strand, 29213975 - 29214237
Alignment:
| Q |
19 |
tcaatgttggtttgtgttgtgtttaagattctttctattgaagataaaaaataattggtccactttaaaacgaaacaacaaaataatttaagtgagtaac |
118 |
Q |
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| T |
29213975 |
tcaatgttggtttgtgctgtgtttaagattctttctattgaagataaaaaataattggtacactttaaagtgaaacaacaaaataatttaagtgagtaac |
29214074 |
T |
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| Q |
119 |
catgcaattttgtgatcactttaaaatgaaaaaggattcagattcatgattaaattagaaagacnnnnnnntgaacacttttttcttttagaaaagaagt |
218 |
Q |
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| T |
29214075 |
catgcaattctgtgatcactttaaaatgaaaaaggactcagattcatgattaaattagaaagacaaaaaaatgaacacttttttcttttaaaaaagaagt |
29214174 |
T |
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| Q |
219 |
agatagaaattgtttgtttattactttattatgcttttatcagaaatattattttgtttatatt |
282 |
Q |
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| T |
29214175 |
agatagaaattgtttgtttattactttattatgcttttatcag-aatattattttgtttatatt |
29214237 |
T |
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