View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1952_low_5 (Length: 603)
Name: NF1952_low_5
Description: NF1952
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1952_low_5 |
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Alignment Details
Target: chr7 (Bit Score: 259; Significance: 1e-144; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 199 - 473
Target Start/End: Original strand, 6704515 - 6704789
Alignment:
| Q |
199 |
ccctatgagaagaaatttattatatctctttaacttataagtttttgtttttgaatagttacactacacctaacttgataatacatgaattccacttcca |
298 |
Q |
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| T |
6704515 |
ccctatgagaagaaatttattatatctctttaacttataagtttttgtttttgtatagttacactacacctaacttgataatacatgaattccacttcca |
6704614 |
T |
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| Q |
299 |
ccaaacttaatacacaaacctaatgccctatgtagtagaagtcacataattatatatatgcgttgagttcaatagacaaacaccttaactctattcacaa |
398 |
Q |
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| T |
6704615 |
ccaaacttaatacacaaacctaatgccctatgtagtagaagtcacataattatatatatgcgttgagttcaatagacaaacaccttaactctattcacaa |
6704714 |
T |
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| Q |
399 |
tttacatgagtttgaaactcaagtaaaacagaaatggaagacaacttcctagaaatgtacttcttaccaacacat |
473 |
Q |
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| T |
6704715 |
tttacatgagtttcaaactcaaataaaacagaaatggaagacaacttccaagaaatgtacttcttaccaacacat |
6704789 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 108; E-Value: 6e-54
Query Start/End: Original strand, 19 - 146
Target Start/End: Original strand, 6704334 - 6704461
Alignment:
| Q |
19 |
aagaatatcatggtcccatgttgaatgttgcgaacttaaatatgtatttatagatagacgcatttctcacatttataaattagttttaaaatggttcagt |
118 |
Q |
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| T |
6704334 |
aagaatatcatggtcccatgttgaatgttgcgaacttaaatatgtatttatagatagacgcattcctcacatttacaaattagttttaaaatggttgagt |
6704433 |
T |
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| Q |
119 |
taggttcaactcaaaacaatgcattatg |
146 |
Q |
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| T |
6704434 |
taggttcaactcaaagtaatgcattatg |
6704461 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 81; E-Value: 8e-38
Query Start/End: Original strand, 507 - 591
Target Start/End: Original strand, 6704797 - 6704881
Alignment:
| Q |
507 |
agcttcccattttaatctacttttggtgaaaaacacattctattaccttttcagacattcctatatatgcaatccacaatagtat |
591 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6704797 |
agcttcccattttaatatacttttggtgaaaaacacattctattaccttttcagacattcctatatatgcaatccacaatagtat |
6704881 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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