View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1952_low_53 (Length: 270)
Name: NF1952_low_53
Description: NF1952
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1952_low_53 |
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Alignment Details
Target: chr2 (Bit Score: 176; Significance: 7e-95; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 176; E-Value: 7e-95
Query Start/End: Original strand, 18 - 213
Target Start/End: Complemental strand, 30676417 - 30676222
Alignment:
| Q |
18 |
tcttttctcattcttttgaaaaggttgttaatcttttcattccttttcgtaacatgcctttatttgtgttgtttacatagcaggatttgaaagttattgc |
117 |
Q |
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| T |
30676417 |
tcttttctcattctttagaaaaagttgttaatcttttcattccttttcgtaacatgcctttatttgtgttgtttacatcgcaggatttgaaagttactgc |
30676318 |
T |
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| Q |
118 |
acttctgatagtgagtgtgagtcttactgttcagatccaaaatatgcgatgtgcttggtcaatagatgtatatgcgactatacataagttaagagt |
213 |
Q |
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| T |
30676317 |
acttctgatagtgagtgtgagtcttactgttcagatccaaaatatgcgatgtgcttggtcaatagatgtatatgcgactatacataagttaggagt |
30676222 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 18 - 229
Target Start/End: Complemental strand, 30611238 - 30611025
Alignment:
| Q |
18 |
tcttttctcattcttttgaaaaggttg--ttaatcttttcattccttttcgtaacatgcctttatttgtgttgtttacatagcaggatttgaaagttatt |
115 |
Q |
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|||||||||||||||||||||| |||| ||||||||||| || ||||| ||||||||||||| ||||||||||||| || |||||||| | |||| | |
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| T |
30611238 |
tcttttctcattcttttgaaaaagttggtttaatcttttcgtttctttttgtaacatgcctttgtttgtgttgtttatatcataggatttgcacgttact |
30611139 |
T |
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| Q |
116 |
gcacttctgatagtgagtgtgagtcttactgttcagatccaaaatatgcgatgtgcttggtcaatagatgtatatgcgactatacataagttaagagtta |
215 |
Q |
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||||| |||||||||||||||||||||||||| ||||||| |||||||||||||||| |||||| ||||||||||||||||||||||||||||||||| |
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| T |
30611138 |
gcactaatgatagtgagtgtgagtcttactgtttcgatccaatatatgcgatgtgcttgatcaataaatgtatatgcgactatacataagttaagagtta |
30611039 |
T |
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| Q |
216 |
agttgaaagtgata |
229 |
Q |
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||||| |||||||| |
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| T |
30611038 |
agttggaagtgata |
30611025 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 18 - 181
Target Start/End: Complemental strand, 30673793 - 30673628
Alignment:
| Q |
18 |
tcttttctcattcttttgaaaaggttg--ttaatcttttcattccttttcgtaacatgcctttatttgtgttgtttacatagcaggatttgaaagttatt |
115 |
Q |
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|||||| |||||||||||||| |||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||| | |
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| T |
30673793 |
tcttttttcattcttttgaaagagttggtttaatcttttcattcctttttgtaacatgcctttatttgtgttgtttacatagcaggatttgaacgttgct |
30673694 |
T |
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| Q |
116 |
gcacttctgatagtgagtgtgagtcttactgttcagatccaaaatatgcgatgtgcttggtcaata |
181 |
Q |
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|||| | | |||||||||||| | |||||||||| ||||||| ||||| |||||||| |||||||| |
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| T |
30673693 |
gcacctataatagtgagtgtgggccttactgttctgatccaatatatgggatgtgctgggtcaata |
30673628 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 18 - 193
Target Start/End: Complemental strand, 30665117 - 30664940
Alignment:
| Q |
18 |
tcttttctcattcttttgaaaaggttg--ttaatcttttcattccttttcgtaacatgcctttatttgtgttgtttacatagcaggatttgaaagttatt |
115 |
Q |
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||||||| ||||||||||||| |||| |||||||||||||||| ||| ||||||||||||||||||||||||||| || |||||||||||| |||| | |
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| T |
30665117 |
tcttttcacattcttttgaaagagttggtttaatcttttcattccgttttgtaacatgcctttatttgtgttgtttatatcgcaggatttgaacgttact |
30665018 |
T |
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| Q |
116 |
gcacttctgatagtgagtgtgagtcttactgttcagatccaaaatatgcgatgtgcttggtcaatagatgtatatgcg |
193 |
Q |
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|||| | ||||||||||| || | |||||||||| ||||||| ||||| |||||||| |||||||| ||||| ||||| |
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| T |
30665017 |
gcacctatgatagtgagtctgggccttactgttctgatccaatatatgggatgtgctgggtcaataaatgtagatgcg |
30664940 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 20 - 192
Target Start/End: Complemental strand, 29831514 - 29831340
Alignment:
| Q |
20 |
ttttctcattcttttgaaaaggttg--ttaatcttttcattccttttcgtaacatgcctttatttgtgttgtttacatagcaggatttgaaagttattgc |
117 |
Q |
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|||||||||||||||||||| |||| ||||||||||| |||||||| |||||||||||||||||||||| |||||| |||| |||||||| ||| ||| |
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| T |
29831514 |
ttttctcattcttttgaaaaagttggtttaatcttttcgttcctttttttaacatgcctttatttgtgttgattacatcgcagaatttgaaaattactgc |
29831415 |
T |
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| Q |
118 |
acttctgatagtgagtgtgagtcttactgttcagatccaaaatatgcgatgtgcttggtcaatagatgtatatgc |
192 |
Q |
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||| |||||||| ||||||||||||||| | |||||||||||| || |||||||| ||||| |||||||||| |
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| T |
29831414 |
actaaagatagtgattgtgagtcttactgtcccaatccaaaatatgggaagtgcttggacaataaatgtatatgc |
29831340 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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