View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1952_low_56 (Length: 256)
Name: NF1952_low_56
Description: NF1952
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1952_low_56 |
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Alignment Details
Target: chr1 (Bit Score: 216; Significance: 1e-119; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 11 - 238
Target Start/End: Complemental strand, 38900614 - 38900387
Alignment:
| Q |
11 |
agaatatggcatttcaactccaggagatttcacaaaagcatcctcacatgtagttttgtaagatatcacagaactgaacttgtaaaaagagtccacgaca |
110 |
Q |
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| T |
38900614 |
agaaaatggcatttcaactccaggagatttcacaaaagcatcctcacatgtagttttgtatgatatcacagaactgaacttgtaaaaagagtccacgaca |
38900515 |
T |
|
| Q |
111 |
ttgtgttgtccaagtaactcaactgtctcattgattgcatccagcattgatttgtattgtgtttggcatatctcgagagccttgattgcttttttgtcgg |
210 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
38900514 |
ttgtgttgtccaagtaactcaactgtctcattgattgcatccagcattgatttgtattgtgtttggcatatctcgagagccttgactgcttttttgtcgg |
38900415 |
T |
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| Q |
211 |
tactagggtctttaagcaactctgtaat |
238 |
Q |
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|||||||||||||||||||||||||||| |
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| T |
38900414 |
tactagggtctttaagcaactctgtaat |
38900387 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 11 - 238
Target Start/End: Complemental strand, 38898476 - 38898249
Alignment:
| Q |
11 |
agaatatggcatttcaactccaggagatttcacaaaagcatcctcacatgtagttttgtaagatatcacagaactgaacttgtaaaaagagtccacgaca |
110 |
Q |
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|||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
38898476 |
agaaaatggtatttcaactccaggagatttcacaaaagcatcctcacatgtagttttgtatgatatcacagaactgaacttgtaaaaagagtccacgaca |
38898377 |
T |
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| Q |
111 |
ttgtgttgtccaagtaactcaactgtctcattgattgcatccagcattgatttgtattgtgtttggcatatctcgagagccttgattgcttttttgtcgg |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||| ||||| || || ||||||||||||| |
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| T |
38898376 |
ttgtgttgtccaagtaactcaactgtctcattgattgcatccagcattgaattgtattgtatttggcatatctgaagagctttcatggcttttttgtcgg |
38898277 |
T |
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| Q |
211 |
tactagggtctttaagcaactctgtaat |
238 |
Q |
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| T |
38898276 |
tgttagggtcattaagcaacgctgtaat |
38898249 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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