View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1952_low_57 (Length: 253)
Name: NF1952_low_57
Description: NF1952
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1952_low_57 |
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| [»] chr8 (5 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 225; Significance: 1e-124; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 17 - 253
Target Start/End: Original strand, 29213694 - 29213930
Alignment:
| Q |
17 |
attgattgtttaaggtgaagtaattaatgaaaataatgaacatgcctgccaaccagcttcaatagtattgagatcttctccaaatgaaccagagatgatc |
116 |
Q |
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| T |
29213694 |
attgattatttaaggtgaagtaattaatgaaaataatgaacatacctgccaaccagcttcaatagtattgagatcttctccaaatgaaccagagatgatc |
29213793 |
T |
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| Q |
117 |
catatttgagataagctgaattcatatggactttccacttgtgggacccacacatttatgctagcttttgctccataatactcatccccactcacatatc |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29213794 |
catatttgagataagctgaattcatatggactttccacttgtgggacccacacatttatgctagcttttgctccataatactcatccccactcacatatc |
29213893 |
T |
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| Q |
217 |
caactgcatgctatgcatcattaagaagaaccaattt |
253 |
Q |
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|||||||||||| |||||||||||||||||||||||| |
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| T |
29213894 |
caactgcatgctgtgcatcattaagaagaaccaattt |
29213930 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 55 - 233
Target Start/End: Complemental strand, 29246253 - 29246078
Alignment:
| Q |
55 |
aacatgcctgccaaccagcttcaatagtattgagatcttctccaaatgaaccagagatgatccatatttgagataagctgaattcatatggactttccac |
154 |
Q |
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||||||||||||||||| ||||||| ||||||||||||| ||| |||||||||| ||||||||||||| ||||||||||||| ||| ||||| || |
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| T |
29246253 |
aacatgcctgccaaccaacttcaatggtattgagatctttccca---gaaccagagacgatccatatttgacccaagctgaattcatttgggctttcaac |
29246157 |
T |
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| Q |
155 |
ttgtgggacccacacatttatgctagcttttgctccataatactcatccccactcacatatccaactgcatgctatgca |
233 |
Q |
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| T |
29246156 |
atggggggcccacacgtttattatagcctgtgctccatagtatatatcccctctcacaaatccaactgaatgctatgca |
29246078 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 55 - 192
Target Start/End: Complemental strand, 29254492 - 29254355
Alignment:
| Q |
55 |
aacatgcctgccaaccagcttcaatagtattgagatcttctccaaatgaaccagagatgatccatatttgagataagctgaattcatatggactttccac |
154 |
Q |
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||||||||||||||||||||||||| || || | |||| |||||||| |||||||| |||||| ||||| | ||||| ||||||| | | |||| || |
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| T |
29254492 |
aacatgcctgccaaccagcttcaatggtgttcatgtcttttccaaatgtaccagagacgatccacatttgtgccaagcttaattcatctaggttttcaac |
29254393 |
T |
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| Q |
155 |
ttgtgggacccacacatttatgctagcttttgctccat |
192 |
Q |
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| T |
29254392 |
atggggggcccacacatttatggtagcctgtgctccat |
29254355 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 112 - 192
Target Start/End: Complemental strand, 29364784 - 29364704
Alignment:
| Q |
112 |
tgatccatatttgagataagctgaattcatatggactttccacttgtgggacccacacatttatgctagcttttgctccat |
192 |
Q |
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| T |
29364784 |
tgatccacatttgagccaagctgaattcatttggactttccacttggggggcccacacgtttattgtagcctttgctccat |
29364704 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 57 - 139
Target Start/End: Complemental strand, 29234712 - 29234630
Alignment:
| Q |
57 |
catgcctgccaaccagcttcaatagtattgagatcttctccaaatgaaccagagatgatccatatttgagataagctgaattc |
139 |
Q |
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| T |
29234712 |
catgcctgccaaccagcttcaatggtgttacggtcatctccaaatggatcagataaaatccatatttgagccaagctgaattc |
29234630 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 70; Significance: 1e-31; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 59 - 228
Target Start/End: Original strand, 14496575 - 14496744
Alignment:
| Q |
59 |
tgcctgccaaccagcttcaatagtattgagatcttctccaaatgaaccagagatgatccatatttgagataagctgaattcatatggactttccacttgt |
158 |
Q |
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||||||||||||||||||||| || || ||||| ||||||||||||||||| |||| ||| ||||| || ||||||||||||||| | || | || || |
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| T |
14496575 |
tgcctgccaaccagcttcaatggtgttaagatcatctccaaatgaaccagaaatgacccacatttgggacaagctgaattcatattggtttgctacacgt |
14496674 |
T |
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| Q |
159 |
gggacccacacatttatgctagcttttgctccataatactcatccccactcacatatccaactgcatgct |
228 |
Q |
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| T |
14496675 |
ggggcccacacgtttatgctagcctttgctccatagtattgatttccagtcacatatccaactgcatgct |
14496744 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 34 - 174
Target Start/End: Original strand, 43814482 - 43814619
Alignment:
| Q |
34 |
aagtaattaatgaaaataatgaacatgcctgccaaccagcttcaatagtattgagatcttctccaaatgaaccagagatgatccatatttgagataagct |
133 |
Q |
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||||||||||||| | |||| ||||||||||||| ||||||||||| | ||||||||| | | |||||| ||||||| || ||||||||||| || || |
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| T |
43814482 |
aagtaattaatgagagtaataaacatgcctgccatccagcttcaatggaattgagatccttttcaaatgtgccagagaggacccatatttgagccaaact |
43814581 |
T |
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| Q |
134 |
gaattcatatggactttccacttgtgggacccacacattta |
174 |
Q |
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| T |
43814582 |
gaattc---ttgactttccacatgtggggcccacacgttta |
43814619 |
T |
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Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 55 - 141
Target Start/End: Complemental strand, 40029565 - 40029482
Alignment:
| Q |
55 |
aacatgcctgccaaccagcttcaatagtattgagatcttctccaaatgaaccagagatgatccatatttgagataagctgaattcat |
141 |
Q |
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| T |
40029565 |
aacatacccgccaaccagcttcaatagtgttgag---ttctccatctgaaccagcagtgacccatatttgagacaagctgaattcat |
40029482 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 56 - 143
Target Start/End: Original strand, 43729005 - 43729092
Alignment:
| Q |
56 |
acatgcctgccaaccagcttcaatagtattgagatcttctccaaatgaaccagagatgatccatatttgagataagctgaattcatat |
143 |
Q |
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|||||||||||| |||||||| | ||||| ||||| | |||||||| |||| || | ||||||||| |||||||||||||||||| |
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| T |
43729005 |
acatgcctgccatccagcttctaatgtattaagatcattaccaaatgatccagcaataacccatatttgtgataagctgaattcatat |
43729092 |
T |
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