View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1952_low_60 (Length: 250)

Name: NF1952_low_60
Description: NF1952
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1952_low_60
NF1952_low_60
[»] chr8 (11 HSPs)
chr8 (11-243)||(2915861-2916093)
chr8 (11-239)||(2910903-2911131)
chr8 (58-243)||(2980380-2980565)
chr8 (51-227)||(3141936-3142112)
chr8 (39-243)||(9850858-9851062)
chr8 (169-242)||(3170158-3170231)
chr8 (178-227)||(3002489-3002538)
chr8 (51-90)||(3173605-3173644)
chr8 (11-86)||(13791585-13791660)
chr8 (178-243)||(2711183-2711248)
chr8 (11-87)||(2711019-2711095)
[»] chr6 (1 HSPs)
chr6 (11-202)||(8942296-8942487)
[»] chr1 (1 HSPs)
chr1 (169-227)||(10755548-10755606)
[»] scaffold0065 (2 HSPs)
scaffold0065 (169-242)||(45608-45681)
scaffold0065 (51-87)||(50932-50968)


Alignment Details
Target: chr8 (Bit Score: 225; Significance: 1e-124; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 11 - 243
Target Start/End: Original strand, 2915861 - 2916093
Alignment:
Q  11 cacagatcaagtaagttctcaattcaatccatttttgatgactctcattccaaatgtcatctaggactaaaaagtattttcttcccgataaattttgccg 110  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2915861 cacacatcaagtaagttctcaattcaatccatttttgatgactctcattccaaatgtcatctaggactaaaaagtattttcttcccgataaattttgccg 2915960  T
Q  111 gaggttattttgcaagttctctaatgataagttttcatcaacttttccatttaataacgactccaatatgttcttcaaaatagttttcacatcaaagtct 210  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  2915961 gaggttattttgcaagttctctaatgataagttttcatcaacttttccatttaataacgactccaatatgttcttcaaaatagttttgacatcaaagtct 2916060  T
Q  211 tcagacacacatacccatatcttcttttcaaac 243  Q
    |||||||||||||||||||||||||||||||||    
T  2916061 tcagacacacatacccatatcttcttttcaaac 2916093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 11 - 239
Target Start/End: Original strand, 2910903 - 2911131
Alignment:
Q  11 cacagatcaagtaagttctcaattcaatccatttttgatgactctcattccaaatgtcatctaggactaaaaagtattttcttcccgataaattttgccg 110  Q
    |||| ||||||||||| ||||| || ||||||||||| |||||||||||||||||||||||||||||||| |||||||||||| | ||||||||||| ||    
T  2910903 cacacatcaagtaagtcctcaactcgatccatttttggtgactctcattccaaatgtcatctaggactaacaagtattttctttctgataaattttgacg 2911002  T
Q  111 gaggttattttgcaagttctctaatgataagttttcatcaacttttccatttaataacgactccaatatgttcttcaaaatagttttcacatcaaagtct 210  Q
    |||||||||||||||||| || |||||||||||||| |||||||| ||||||||||| ||||||||||| ||||||||||||||||| |||||||||| |    
T  2911003 gaggttattttgcaagttgtccaatgataagttttcgtcaactttcccatttaataatgactccaatattttcttcaaaatagttttgacatcaaagttt 2911102  T
Q  211 tcagacacacatacccatatcttcttttc 239  Q
    | ||| ||||| |||||||||||||||||    
T  2911103 ttagagacacacacccatatcttcttttc 2911131  T

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Target: chr8; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 58 - 243
Target Start/End: Complemental strand, 2980565 - 2980380
Alignment:
Q  58 ttccaaatgtcatctaggactaaaaagtattttcttcccgataaattttgccggaggttattttgcaagttctctaatgataagttttcatcaacttttc 157  Q
    ||||||||||||||||||||||| ||||||||| | || | |||||| |  || ||  | ||||||||||| |  ||||||||  | ||||||| ||| |    
T  2980565 ttccaaatgtcatctaggactaacaagtattttttaccagttaaattgtcacgaagcatgttttgcaagttttgcaatgataacgtatcatcaaatttcc 2980466  T
Q  158 catttaataacgactccaatatgttcttcaaaatagttttcacatcaaagtcttcagacacacatacccatatcttcttttcaaac 243  Q
     |||   ||| ||||||| ||||||||||| ||||||||| ||||||||||  ||||| ||||||||||| ||  |||||||||||    
T  2980465 tattggttaatgactccattatgttcttcagaatagttttgacatcaaagttatcagagacacatacccacattctcttttcaaac 2980380  T

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Target: chr8; HSP #4
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 51 - 227
Target Start/End: Original strand, 3141936 - 3142112
Alignment:
Q  51 actctcattccaaatgtcatctaggactaaaaagtattttcttcccgataaattttgccggaggttattttgcaagttctctaatgataagttttcatca 150  Q
    |||||| ||||||||||||||||||||||| ||||||||| | || | || |||||  || ||  | ||||||||||| |||||||||||  | |||| |    
T  3141936 actctcgttccaaatgtcatctaggactaacaagtattttttaccagttagattttctcgaagcatgttttgcaagttttctaatgataatgtatcatta 3142035  T
Q  151 acttttccatttaataacgactccaatatgttcttcaaaatagttttcacatcaaagtcttcagacacacataccca 227  Q
    | |  | | |||  ||| |||||||| |||||||||| ||||||||| ||||||||||  ||||| ||||| |||||    
T  3142036 attggttcctttgttaatgactccaacatgttcttcacaatagttttgacatcaaagttatcagagacacaaaccca 3142112  T

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Target: chr8; HSP #5
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 39 - 243
Target Start/End: Original strand, 9850858 - 9851062
Alignment:
Q  39 ccatttttgatgactctcattccaaatgtcatctaggactaaaaagtattttcttcccgataaattttgccggaggttattttgcaagttctctaatgat 138  Q
    |||||||| || |||||||||||||||||||||||| ||||| |||||| |  | || | |||||  |  || || ||| |||||||||| || ||||||    
T  9850858 ccatttttcataactctcattccaaatgtcatctagaactaacaagtatctcttaccagttaaatggtcacgaagcttagtttgcaagttgtccaatgat 9850957  T
Q  139 aagttttcatcaacttttccatttaataacgactccaatatgttcttcaaaatagttttcacatcaaagtcttcagacacacatacccatatcttctttt 238  Q
    ||    ||||||| |||    ||   ||| |||||||| |||||||||| ||||||||| || ||||||| |||||| ||||||||||| ||| ||||||    
T  9850958 aatgcatcatcaattttgttcttggttaatgactccaacatgttcttcacaatagttttgacttcaaagttttcagagacacatacccacatcctctttt 9851057  T
Q  239 caaac 243  Q
    |||||    
T  9851058 caaac 9851062  T

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Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 169 - 242
Target Start/End: Original strand, 3170158 - 3170231
Alignment:
Q  169 gactccaatatgttcttcaaaatagttttcacatcaaagtcttcagacacacatacccatatcttcttttcaaa 242  Q
    |||||||| || ||||||| ||||||||| ||||||||||  ||||| ||||||||||| ||| ||||||||||    
T  3170158 gactccaacattttcttcagaatagttttgacatcaaagttatcagagacacatacccacatcctcttttcaaa 3170231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 178 - 227
Target Start/End: Complemental strand, 3002538 - 3002489
Alignment:
Q  178 atgttcttcaaaatagttttcacatcaaagtcttcagacacacataccca 227  Q
    |||||||||| ||||||||| |||||||||| |||||| |||||||||||    
T  3002538 atgttcttcacaatagtttttacatcaaagttttcagagacacataccca 3002489  T

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Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 51 - 90
Target Start/End: Original strand, 3173605 - 3173644
Alignment:
Q  51 actctcattccaaatgtcatctaggactaaaaagtatttt 90  Q
    |||||| ||||||||||||||||||||||| |||||||||    
T  3173605 actctcgttccaaatgtcatctaggactaataagtatttt 3173644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 11 - 86
Target Start/End: Complemental strand, 13791660 - 13791585
Alignment:
Q  11 cacagatcaagtaagttctcaattcaatccatttttgatgactctcattccaaatgtcatctaggactaaaaagta 86  Q
    |||| ||||| ||||||||||||| | ||||||||| ||||||  |||| ||||||||||| | |||||| |||||    
T  13791660 cacacatcaaataagttctcaattgagtccatttttcatgactagcattgcaaatgtcatccaagactaacaagta 13791585  T

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Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 178 - 243
Target Start/End: Original strand, 2711183 - 2711248
Alignment:
Q  178 atgttcttcaaaatagttttcacatcaaagtcttcagacacacatacccatatcttcttttcaaac 243  Q
    |||||||||| ||||||||| ||||||||||  || || ||||||||||| ||  |||||||||||    
T  2711183 atgttcttcagaatagttttgacatcaaagttatccgagacacatacccacatactcttttcaaac 2711248  T

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Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 11 - 87
Target Start/End: Original strand, 2711019 - 2711095
Alignment:
Q  11 cacagatcaagtaagttctcaattcaatccatttttgatgactctcattccaaatgtcatctaggactaaaaagtat 87  Q
    |||| ||||| ||||| |||||||||  ||| |||| || |||||| |||||||||||||| | |||||| ||||||    
T  2711019 cacacatcaaataagtcctcaattcatcccacttttcataactctcgttccaaatgtcatccaagactaacaagtat 2711095  T

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Target: chr6 (Bit Score: 120; Significance: 2e-61; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 11 - 202
Target Start/End: Original strand, 8942296 - 8942487
Alignment:
Q  11 cacagatcaagtaagttctcaattcaatccatttttgatgactctcattccaaatgtcatctaggactaaaaagtattttcttcccgataaattttgccg 110  Q
    |||| ||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||| || | ||||||||||| |     
T  8942296 cacaaatcaagtaagtactcaattcaatccttttttgatgactctcattccaaatgtcatctaggactaataagtattttatttctgataaattttgaca 8942395  T
Q  111 gaggttattttgcaagttctctaatgataagttttcatcaacttttccatttaataacgactccaatatgttcttcaaaatagttttcacat 202  Q
    ||| ||| |||||||||| || |||||||||||||| ||||||||||||| |||||||||||||||||  ||||||||||||||||| ||||    
T  8942396 gagattactttgcaagttgtccaatgataagttttcgtcaacttttccatataataacgactccaataccttcttcaaaatagttttgacat 8942487  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 169 - 227
Target Start/End: Original strand, 10755548 - 10755606
Alignment:
Q  169 gactccaatatgttcttcaaaatagttttcacatcaaagtcttcagacacacataccca 227  Q
    |||||||| |||||||||| ||||||||| || |||||||  ||||| |||||||||||    
T  10755548 gactccaacatgttcttcagaatagttttgacgtcaaagttatcagagacacataccca 10755606  T

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Target: scaffold0065 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: scaffold0065
Description:

Target: scaffold0065; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 169 - 242
Target Start/End: Complemental strand, 45681 - 45608
Alignment:
Q  169 gactccaatatgttcttcaaaatagttttcacatcaaagtcttcagacacacatacccatatcttcttttcaaa 242  Q
    |||| ||| |||||||| | ||||||||| ||||||||||  | ||| ||||||||||| ||| ||||||||||    
T  45681 gacttcaacatgttctttagaatagttttgacatcaaagttattagagacacatacccacatcctcttttcaaa 45608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0065; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 51 - 87
Target Start/End: Complemental strand, 50968 - 50932
Alignment:
Q  51 actctcattccaaatgtcatctaggactaaaaagtat 87  Q
    |||||| ||||||||||||||||||||||| ||||||    
T  50968 actctcgttccaaatgtcatctaggactaacaagtat 50932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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