View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1952_low_61 (Length: 247)
Name: NF1952_low_61
Description: NF1952
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1952_low_61 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 233; Significance: 1e-129; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 7 - 247
Target Start/End: Original strand, 35440191 - 35440431
Alignment:
| Q |
7 |
aagaaaatctcaaaacactgcaattgtgctgagatcactagcaatttctaggtgcgaaatcttggaagcagtacttgatggtcaaggactcaatgttgag |
106 |
Q |
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| T |
35440191 |
aagaaaatctcaaaacactgcaattgtgctgagatcactagcaatttctaggcgcgaaatcttggaagcagtacttgatggtcaaggactcaatgttgag |
35440290 |
T |
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| Q |
107 |
acccttgaaaaactcacaaaaatagctccatctcaagaagaagcatccaaaatagtccaattcagtggaaacccgaataaccttgctgaagctgagtctt |
206 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
35440291 |
acccttgaaaaactcacaaaaatagctccatctcaagaagaagcatccaaaatagtccaattcagcggaaacccgaataaccttgctgaagctgagtctt |
35440390 |
T |
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| Q |
207 |
tcctatactacatccttaaatcagttccaacatcgttcaac |
247 |
Q |
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| T |
35440391 |
tcctatactacatccttaaatcagttccaacatcgttcaac |
35440431 |
T |
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